Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   DK41_RS07935 Genome accession   NZ_CP007570
Coordinates   1614918..1615508 (-) Length   196 a.a.
NCBI ID   WP_000613483.1    Uniprot ID   A0AAV3JHA0
Organism   Streptococcus agalactiae strain GBS1-NY     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609918..1620508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK41_RS07910 (DK41_08005) - 1610557..1611321 (-) 765 WP_001185985.1 ATP-binding cassette domain-containing protein -
  DK41_RS07915 (DK41_08010) - 1611322..1612275 (-) 954 WP_000662328.1 branched-chain amino acid ABC transporter permease -
  DK41_RS07920 (DK41_08015) - 1612278..1613147 (-) 870 WP_000941396.1 branched-chain amino acid ABC transporter permease -
  DK41_RS07925 (DK41_08020) - 1613253..1614419 (-) 1167 WP_000415516.1 ABC transporter substrate-binding protein -
  DK41_RS07930 (DK41_08025) - 1614573..1614818 (-) 246 WP_001041186.1 DUF2129 domain-containing protein -
  DK41_RS07935 (DK41_08030) clpP 1614918..1615508 (-) 591 WP_000613483.1 ATP-dependent Clp protease proteolytic subunit Regulator
  DK41_RS07940 (DK41_08035) upp 1615633..1616262 (-) 630 WP_000514490.1 uracil phosphoribosyltransferase -
  DK41_RS07945 (DK41_08040) - 1616372..1617541 (-) 1170 WP_000634073.1 MalY/PatB family protein -
  DK41_RS07950 (DK41_08045) - 1617677..1618225 (-) 549 WP_001019794.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  DK41_RS07955 (DK41_08050) - 1618398..1619750 (-) 1353 WP_000427467.1 APC family permease -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21550.52 Da        Isoelectric Point: 4.5933

>NTDB_id=121067 DK41_RS07935 WP_000613483.1 1614918..1615508(-) (clpP) [Streptococcus agalactiae strain GBS1-NY]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILADNSGQ
SIEKVHDDAERDRWMSAQETLDYGFIDAIMENNNLQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=121067 DK41_RS07935 WP_000613483.1 1614918..1615508(-) (clpP) [Streptococcus agalactiae strain GBS1-NY]
ATGATTCCAGTAGTTATTGAACAAACAAGTCGTGGTGAACGCTCTTATGATATTTACTCACGTCTTTTAAAAGATCGTAT
TATTATGTTGACAGGCCAAGTTGAGGATAATATGGCCAATAGTATCATTGCACAGTTATTGTTTCTCGATGCACAAGATA
ATACAAAGGATATTTACCTTTATGTCAATACACCAGGTGGTTCAGTATCGGCTGGACTTGCTATTGTGGATACCATGAAC
TTTATTAAATCGGACGTACAGACGATTGTTATGGGGATGGCTGCTTCGATGGGAACCATTATTGCTTCGAGTGGTGCTAA
AGGAAAACGTTTTATGTTACCGAATGCAGAATATATGATCCACCAACCAATGGGTGGAACAGGCGGAGGCACACAGCAAT
CTGATATGGCTATCGCTGCTGAGCATCTTTTAAAAACGCGTCATACTTTAGAAAAAATCTTAGCTGATAATTCTGGTCAA
TCTATTGAAAAAGTCCATGATGATGCAGAGCGTGATCGTTGGATGAGTGCTCAAGAAACACTTGATTATGGCTTTATTGA
TGCTATTATGGAAAATAATAATCTACAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus thermophilus LMG 18311

92.347

100

0.923
  clpP Streptococcus thermophilus LMD-9

92.347

100

0.923
  clpP Streptococcus pneumoniae Rx1

92.308

99.49

0.918
  clpP Streptococcus pneumoniae D39

92.308

99.49

0.918
  clpP Streptococcus pneumoniae R6

92.308

99.49

0.918
  clpP Streptococcus pneumoniae TIGR4

92.308

99.49

0.918
  clpP Streptococcus pyogenes JRS4

89.286

100

0.893
  clpP Streptococcus pyogenes MGAS315

89.286

100

0.893
  clpP Streptococcus mutans UA159

88.776

100

0.888
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.204

100

0.852
  clpP Lactococcus lactis subsp. cremoris KW2

84.694

100

0.847
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571
  clpP Bacillus subtilis subsp. subtilis str. 168

57.895

96.939

0.561

Multiple sequence alignment