Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DK92_RS07415 Genome accession   NZ_CP007561
Coordinates   1504837..1505388 (-) Length   183 a.a.
NCBI ID   WP_080343537.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS596     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1499837..1510388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK92_RS07385 (DK92_07600) rsfS 1500610..1500963 (-) 354 WP_011017339.1 ribosome silencing factor -
  DK92_RS07390 (DK92_07605) yqeK 1500987..1501580 (-) 594 WP_002985989.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DK92_RS07395 (DK92_07610) - 1501577..1502209 (-) 633 WP_031488555.1 nicotinate-nucleotide adenylyltransferase -
  DK92_RS07400 (DK92_07615) yhbY 1502278..1502586 (-) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  DK92_RS07405 (DK92_07620) yqeH 1502611..1503729 (-) 1119 WP_047235968.1 ribosome biogenesis GTPase YqeH -
  DK92_RS07410 (DK92_07625) - 1503729..1504256 (-) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  DK92_RS07415 (DK92_07630) comX/sigX/comX2/sigX2 1504837..1505388 (-) 552 WP_080343537.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22250.07 Da        Isoelectric Point: 10.0375

>NTDB_id=120908 DK92_RS07415 WP_080343537.1 1504837..1505388(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NGAS596]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSPERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=120908 DK92_RS07415 WP_080343537.1 1504837..1505388(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NGAS596]
ATGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATTTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCCAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

99.454

100

0.995
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

99.454

100

0.995
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

98.907

100

0.989
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

98.907

100

0.989
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

98.907

100

0.989
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

98.907

100

0.989
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

49.333

81.967

0.404
  comX Streptococcus sobrinus strain NIDR 6715-7

46.104

84.153

0.388
  comX/sigX Streptococcus mutans UA159

44.444

83.607

0.372

Multiple sequence alignment