Detailed information NTG0120908

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SH03_RS17850
• Genome accession: NZ_CP010441
• Coordinates: 3603640..3604632 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli K-12 strain K-12 MG1655
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3598640..3609632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SH03_RS17830 (SH03_17840)	otnK	3599416..3600582 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
SH03_RS17835 (SH03_17845)	ygbL	3600674..3601312 (+)	639	WP_001278991.1	aldolase	-
SH03_RS17840 (SH03_17850)	ygbM	3601317..3602093 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
SH03_RS17845 (SH03_17855)	ygbN	3602182..3603546 (+)	1365	WP_000104441.1	GntP family transporter	-
SH03_RS17850 (SH03_17860)	rpoS	3603640..3604632 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
SH03_RS17855 (SH03_17865)	nlpD	3604695..3605789 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
SH03_RS17860 (SH03_17870)	pcm	3605974..3606600 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
SH03_RS17865 (SH03_17875)	surE	3606594..3607355 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
SH03_RS17870 (SH03_17880)	truD	3607336..3608385 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
SH03_RS17875 (SH03_17885)	ispF	3608382..3608861 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
SH03_RS17880 (SH03_17890)	ispD	3608861..3609571 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=120908 SH03_RS17850 WP_000081588.1 3603640..3604632(-) (rpoS) [Escherichia coli K-12 strain K-12 MG1655]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=120908 SH03_RS17850 WP_000081588.1 3603640..3604632(-) (rpoS) [Escherichia coli K-12 strain K-12 MG1655]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715