Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | D082_RS08200 | Genome accession | NZ_CP007542 |
| Coordinates | 1807592..1807957 (+) | Length | 121 a.a. |
| NCBI ID | WP_028948128.1 | Uniprot ID | - |
| Organism | Synechocystis sp. PCC 6714 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1802592..1812957
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D082_RS08185 (D082_18240) | cobT | 1802861..1803970 (-) | 1110 | WP_028948131.1 | nicotinate mononucleotide-dependent phosphoribosyltransferase CobT | - |
| D082_RS08190 (D082_18250) | - | 1804094..1806004 (+) | 1911 | WP_028948130.1 | long-chain fatty acid--CoA ligase | - |
| D082_RS08195 (D082_18260) | - | 1806229..1807392 (+) | 1164 | WP_028948129.1 | response regulator | - |
| D082_RS08200 (D082_18280) | pilH | 1807592..1807957 (+) | 366 | WP_028948128.1 | response regulator transcription factor | Machinery gene |
| D082_RS08205 (D082_18290) | - | 1808029..1808580 (+) | 552 | WP_028948127.1 | chemotaxis protein CheW | - |
| D082_RS08210 (D082_18300) | pilJ | 1808654..1811266 (+) | 2613 | WP_028948126.1 | methyl-accepting chemotaxis protein | Machinery gene |
| D082_RS08215 (D082_18310) | - | 1811279..1812070 (+) | 792 | WP_028948125.1 | ABC transporter permease | - |
| D082_RS08220 (D082_18320) | - | 1812187..1812438 (+) | 252 | WP_028948124.1 | TatA/E family twin arginine-targeting protein translocase | - |
Sequence
Protein
Download Length: 121 a.a. Molecular weight: 13617.85 Da Isoelectric Point: 5.8739
>NTDB_id=120734 D082_RS08200 WP_028948128.1 1807592..1807957(+) (pilH) [Synechocystis sp. PCC 6714]
MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEVCRRIKSDPKTKNVPVIM
CSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLRG
MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEVCRRIKSDPKTKNVPVIM
CSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLRG
Nucleotide
Download Length: 366 bp
>NTDB_id=120734 D082_RS08200 WP_028948128.1 1807592..1807957(+) (pilH) [Synechocystis sp. PCC 6714]
ATGAACGCAGTTTTGCTGGTTGAAGACAGCTCTAGTCAGCGCGAGATGATATCTGGCATCCTCAAAGACCATGGCTGGCA
GGTCACCATCGCCTGTGATGGGGTAGAGGCCCTAGAAAAATTGCAGAACTTTAGTCCGGACCTAGTGGTGCTAGATATTG
TCATGCCCCGCATGAATGGCTATGAGGTTTGTCGCCGCATCAAATCCGACCCGAAAACAAAAAATGTGCCGGTGATTATG
TGTTCTTCCAAGGGGGAAGAGTTTGATCGTTTTTGGGGCATGCGCCAAGGGGCTGACGCCTACATTGCCAAACCATTTCA
ACCGATGGAATTGGTGGGCACCATCAAACAACTACTACGGGGCTAA
ATGAACGCAGTTTTGCTGGTTGAAGACAGCTCTAGTCAGCGCGAGATGATATCTGGCATCCTCAAAGACCATGGCTGGCA
GGTCACCATCGCCTGTGATGGGGTAGAGGCCCTAGAAAAATTGCAGAACTTTAGTCCGGACCTAGTGGTGCTAGATATTG
TCATGCCCCGCATGAATGGCTATGAGGTTTGTCGCCGCATCAAATCCGACCCGAAAACAAAAAATGTGCCGGTGATTATG
TGTTCTTCCAAGGGGGAAGAGTTTGATCGTTTTTGGGGCATGCGCCAAGGGGCTGACGCCTACATTGCCAAACCATTTCA
ACCGATGGAATTGGTGGGCACCATCAAACAACTACTACGGGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
100 |
99.174 |
0.992 |
| pilG | Acinetobacter baumannii strain A118 |
41.228 |
94.215 |
0.388 |
| pilL-C | Synechocystis sp. PCC 6803 |
38.017 |
100 |
0.38 |
| chpA | Acinetobacter baumannii strain A118 |
39.655 |
95.868 |
0.38 |
| micA | Streptococcus pneumoniae Cp1015 |
38.333 |
99.174 |
0.38 |
| vicR | Streptococcus mutans UA159 |
38.333 |
99.174 |
0.38 |