Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E1470_RS14410 Genome accession   NZ_CP010344
Coordinates   2913381..2913896 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli ECC-1470     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2908381..2918896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1470_RS14385 (E1470_c27630) ygaZ 2908780..2909517 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  E1470_RS14390 (E1470_c27640) ygaH 2909507..2909842 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  E1470_RS14395 (E1470_c27650) emrR 2909933..2910463 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  E1470_RS14400 (E1470_c27660) emrA 2910590..2911762 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  E1470_RS14405 (E1470_c27670) emrB 2911779..2913317 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  E1470_RS14410 (E1470_c27680) luxS 2913381..2913896 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  E1470_RS14415 (E1470_c27690) gshA 2914046..2915602 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  E1470_RS14420 (E1470_c27700) yqaA 2915675..2916103 (-) 429 WP_001287457.1 YqaA family protein -
  E1470_RS14425 (E1470_c27710) yqaB 2916100..2916666 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  E1470_RS14455 (E1470_c27770) csrA 2918259..2918444 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=120163 E1470_RS14410 WP_001130210.1 2913381..2913896(-) (luxS) [Escherichia coli ECC-1470]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=120163 E1470_RS14410 WP_001130210.1 2913381..2913896(-) (luxS) [Escherichia coli ECC-1470]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment