Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CL52_RS02580 Genome accession   NZ_CP007511
Coordinates   569423..571504 (+) Length   693 a.a.
NCBI ID   WP_043218307.1    Uniprot ID   A0A8D3XYK6
Organism   Stutzerimonas balearica DSM 6083 strain DSM6083 (=SP1402)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 564423..576504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CL52_RS02560 (CL52_02610) pilM 566587..567651 (+) 1065 WP_043218298.1 pilus assembly protein PilM Machinery gene
  CL52_RS02565 (CL52_02615) - 567651..568223 (+) 573 WP_043218300.1 PilN domain-containing protein -
  CL52_RS02570 (CL52_02620) pilO 568220..568843 (+) 624 WP_043218303.1 type 4a pilus biogenesis protein PilO -
  CL52_RS02575 (CL52_02625) pilP 568840..569367 (+) 528 WP_043218306.1 type 4a pilus biogenesis lipoprotein PilP -
  CL52_RS02580 (CL52_02630) pilQ 569423..571504 (+) 2082 WP_043218307.1 type IV pilus secretin PilQ Machinery gene
  CL52_RS02585 (CL52_02635) aroK 571509..572054 (+) 546 WP_061339736.1 shikimate kinase AroK -
  CL52_RS02590 (CL52_02640) aroB 572079..573182 (+) 1104 WP_043218310.1 3-dehydroquinate synthase -
  CL52_RS02595 (CL52_02645) - 573185..574717 (+) 1533 WP_043222889.1 AAA family ATPase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 74595.33 Da        Isoelectric Point: 4.6300

>NTDB_id=120163 CL52_RS02580 WP_043218307.1 569423..571504(+) (pilQ) [Stutzerimonas balearica DSM 6083 strain DSM6083 (=SP1402)]
MNSTLSRVGVAMLALLASPALLAANLNKLDVASLPGDRVELKLAFDEPVSKPRGYTLEQPARIALDLPGVSNKLGVKNRE
LGLGNARSVTVVEAQGRTRLIVNLASLVPYATRVEGNELFIVLGENEGAAAPIASAAASPVASRPAPVAAKMVGKAISNI
DFRRGEDGAGNVVITLSDASVGSTIEEQGGKINVKFDKAQLPEALRVRLDVQDFATPVRFVDATSSSGGASVAIEPSGRY
DYLAYQTDNQLTISVKPLSEDEAEKRKSERFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQNVP
WDQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRRELIQVNYAKAADIARLFQSVTENGSGA
TEERGSIAVDDRTNSIIAYQTQERLDELRRIVMQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGTQIFANGRGAVYGND
DLGDEGGDSGEDSNGNFPFVDLGVANRTAGIGIGYVTDNLILDLELSAMEKTGNGEVVSQPKVVTSDKETAKILKGSEIP
YQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFQNVLNGVPPINKNEVNAKVLVNDGETIVIGGVFS
NTQSKSVDKVPFLGDLPYLGRLFRRDTVTNEKSELLIFLTPRIMSNQAIAVSH

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=120163 CL52_RS02580 WP_043218307.1 569423..571504(+) (pilQ) [Stutzerimonas balearica DSM 6083 strain DSM6083 (=SP1402)]
ATGAATAGCACCCTCTCTCGTGTGGGCGTCGCCATGCTGGCGCTGCTTGCCTCGCCTGCGCTGTTGGCAGCGAATTTGAA
CAAGCTTGATGTGGCATCGCTGCCGGGAGATCGGGTCGAGCTCAAGCTGGCCTTCGATGAGCCGGTCAGCAAGCCGCGCG
GCTATACGCTAGAGCAGCCGGCCCGCATTGCGCTGGACCTGCCAGGCGTTTCGAACAAGCTTGGTGTGAAGAATCGGGAG
CTGGGCCTTGGCAACGCGCGTAGCGTAACGGTGGTCGAAGCGCAGGGGCGTACCCGCCTGATTGTTAATCTTGCGTCGCT
CGTGCCCTACGCCACTCGAGTCGAAGGTAACGAGCTGTTCATTGTTCTCGGCGAGAACGAGGGGGCGGCTGCCCCAATTG
CGTCCGCGGCTGCGTCCCCGGTAGCGAGCCGGCCTGCGCCGGTCGCCGCCAAGATGGTCGGCAAAGCCATCAGTAATATC
GATTTCCGACGAGGCGAAGACGGAGCAGGCAATGTCGTGATCACCCTGTCCGACGCATCGGTCGGCTCGACCATCGAGGA
GCAGGGCGGAAAGATCAATGTGAAGTTCGACAAGGCACAGCTGCCGGAAGCGCTACGTGTCCGCCTGGATGTGCAGGACT
TTGCCACGCCGGTGCGCTTCGTGGATGCCACCAGCTCATCCGGCGGCGCCAGTGTGGCGATCGAGCCGAGCGGCCGATAT
GACTATCTCGCATACCAGACGGACAACCAGCTGACCATTAGCGTAAAGCCGCTGAGTGAAGACGAGGCCGAGAAGCGCAA
GTCTGAGCGCTTTGCGTACAGCGGGGAAAAGCTGTCGCTGAACTTCCAGGATATCGATGTGCGCTCGGTGCTGCAGCTGA
TTGCCGACTTCACCGATCTGAACCTGGTGGCCAGTGACACCGTGCAGGGCAACATTACCCTGCGTCTGCAGAATGTGCCG
TGGGATCAGGCGCTTGACCTGGTGCTCAAGACGAAGGGATTGGATAAGCGCCAGGTAGGTAATGTGCTGCTTGTGGCGCC
TGCGGACGAGATCGCGGCCCGTGAGCGGCAGGAGCTCGAGTCGCAGCGGCAAATCGCCGAGCTGGCGCCGCTGCGGCGCG
AGCTGATTCAGGTCAACTATGCCAAGGCTGCCGACATTGCGCGTCTGTTCCAGTCGGTCACCGAGAATGGCAGCGGGGCA
ACCGAGGAGCGCGGCTCCATCGCCGTCGATGACCGCACCAACAGCATCATCGCCTACCAGACCCAGGAGCGGCTGGACGA
ACTGCGCCGCATCGTCATGCAGCTGGATATCCCGGTTCGCCAGGTGATGATCGAGGCGCGCATCGTCGAGGCGAACGTCG
ATTACGACAAGAGTCTTGGGGTGCGCTGGGGCGGAACGCAAATATTTGCCAACGGTCGCGGCGCGGTCTACGGCAATGAC
GATTTGGGAGATGAAGGTGGAGATTCCGGTGAGGATTCCAATGGCAACTTCCCCTTTGTCGATCTTGGTGTGGCGAATCG
AACAGCAGGAATTGGTATTGGCTACGTCACTGACAATCTGATTCTCGATCTGGAACTGTCGGCGATGGAGAAAACCGGAA
ATGGCGAGGTTGTTTCGCAGCCGAAGGTCGTTACGTCGGACAAGGAAACAGCCAAGATCCTGAAGGGCTCCGAAATTCCC
TACCAAGAAGCCAGCTCCAGCGGTGCGACCAGCACCTCTTTCAAGGAAGCGGCGCTGTCGTTGGAGGTGACCCCTCAGAT
CACGCCTGACAACCGCATCATTATGGAGGTCAAGGTCACGAAAGACGCGCCAGACTTCCAGAACGTGCTCAACGGCGTGC
CGCCAATCAATAAGAACGAGGTCAACGCCAAAGTGCTGGTCAACGACGGCGAGACGATTGTGATCGGTGGTGTCTTCTCG
AATACGCAGAGCAAGTCGGTCGACAAGGTACCGTTCCTGGGGGACTTGCCTTACCTCGGTCGCCTGTTCCGTCGTGACAC
TGTAACCAACGAAAAATCGGAACTGCTGATCTTCCTGACTCCGCGTATCATGAGTAACCAAGCGATAGCTGTGAGTCATT
GA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(528-684)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-441)

AMIN domain (AMIN)

(38-122)

Secretin and TonB N terminus short domain (STN)

(301-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

74.131

100

0.769
  comQ Acinetobacter baylyi ADP1

42.264

100

0.426
  pilQ Acinetobacter baumannii strain A118

39.382

100

0.423
  pilQ Acinetobacter baumannii D1279779

39.382

100

0.423
  pilQ Legionella pneumophila strain Lp02

38.643

97.835

0.378
  pilQ Legionella pneumophila strain ERS1305867

38.633

97.114

0.375

Multiple sequence alignment