Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   STAB904_RS01450 Genome accession   NZ_CP007241
Coordinates   274010..274561 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1E1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 269010..279561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAB904_RS01450 (STAB904_01610) comX/sigX/comX2/sigX2 274010..274561 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  STAB904_RS01455 (STAB904_01615) - 275120..275647 (+) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  STAB904_RS01460 (STAB904_01620) yqeH 275647..276765 (+) 1119 WP_015016688.1 ribosome biogenesis GTPase YqeH -
  STAB904_RS01465 (STAB904_01625) yhbY 276790..277098 (+) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  STAB904_RS01470 (STAB904_01630) - 277167..277799 (+) 633 WP_038433907.1 nicotinate-nucleotide adenylyltransferase -
  STAB904_RS01475 (STAB904_01635) yqeK 277796..278389 (+) 594 WP_038433908.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  STAB904_RS01480 (STAB904_01640) rsfS 278413..278766 (+) 354 WP_011017339.1 ribosome silencing factor -
  STAB904_RS01485 (STAB904_01645) - 278814..279557 (+) 744 WP_038433909.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=118075 STAB904_RS01450 WP_010921894.1 274010..274561(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 1E1]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=118075 STAB904_RS01450 WP_010921894.1 274010..274561(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 1E1]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAAGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.