Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   A415_RS06965 Genome accession   NZ_CP007199
Coordinates   1351874..1353565 (+) Length   563 a.a.
NCBI ID   WP_003722494.1    Uniprot ID   A0A5D5RB09
Organism   Listeria monocytogenes serotype 1/2a str. 10-0933     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1346874..1358565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A415_RS06935 (A415_1357) - 1346884..1347111 (+) 228 WP_003722489.1 exodeoxyribonuclease VII small subunit -
  A415_RS06940 (A415_1358) - 1347114..1347995 (+) 882 WP_014600808.1 polyprenyl synthetase family protein -
  A415_RS06945 (A415_1359) - 1348194..1348394 (+) 201 WP_003719639.1 cold-shock protein -
  A415_RS06950 (A415_1360) dxs 1348561..1350390 (+) 1830 WP_077906795.1 1-deoxy-D-xylulose-5-phosphate synthase -
  A415_RS06955 (A415_1361) - 1350387..1351211 (+) 825 WP_003722492.1 TlyA family RNA methyltransferase -
  A415_RS06960 (A415_1362) ahrC 1351402..1351851 (+) 450 WP_003722493.1 transcriptional regulator AhrC/ArgR -
  A415_RS06965 (A415_1363) recN 1351874..1353565 (+) 1692 WP_003722494.1 DNA repair protein RecN Machinery gene
  A415_RS06970 (A415_1364) - 1353694..1354560 (+) 867 WP_003732271.1 phosphate acyltransferase -
  A415_RS06975 (A415_1365) buk 1354697..1355764 (+) 1068 WP_003722496.1 butyrate kinase -
  A415_RS06980 (A415_1366) lpdA 1355779..1357206 (+) 1428 WP_023548860.1 dihydrolipoyl dehydrogenase -
  A415_RS06985 (A415_1367) - 1357231..1358226 (+) 996 WP_003722498.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63523.36 Da        Isoelectric Point: 5.0673

>NTDB_id=117598 A415_RS06965 WP_003722494.1 1351874..1353565(+) (recN) [Listeria monocytogenes serotype 1/2a str. 10-0933]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENADLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMETAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKTELTKQAATLTDIRKKAAVTLEKQIKQELNQLYMEKAIFSVRFE
ANKMELTELGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGVEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=117598 A415_RS06965 WP_003722494.1 1351874..1353565(+) (recN) [Listeria monocytogenes serotype 1/2a str. 10-0933]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCACGGAGAGGAACGTTTAGAGCTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCT
TTAATAGAAAATGGTATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGTCTGTTTCGCTCGGGAAAAAATAGTTG
CCGAATCAATGGCAAGCTTGTAACTACTGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTATCATTACTTGATCGATTCGCTTCTGACAAAATCAAGCCAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACGATTGAGAAAGAATGGCAAAATTGGACAAAAAATGAGCGAGAATT
AGCACAACGTCTTGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCGATTTGCAAGCTGGTGAAGAAGATCGTT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGCGCTTATGCGGCGATTCAAGGC
GAGCCAGGTGGACTTGAATTCGTTGGGGAAGCAATGCGTCAAATGGAGACAGCTGCAAGTATTCATACGGATTATAAAGC
AGTTAGTGAAGCAATTTCTTCTAGCTACTATATGTTAGAAGATAGCATGAGCCAAATCAGACAGTCACTTGATCAGCTCG
AATTCCAACCAGAAGAACTTAATCAAATTGAATCGCGTTTAAATGATTTAAACCAATTGAAACGCAAATATGGTAAAACA
ATTGAAGATATCATCCAGTATGAGCAAGAAATAAGTAGCGAAATGGAAAAACTAACGGATAGTGAATCGCATGTGGGTCA
TTTAGAGACAAAATTAGCCACACTCAAAACAGAACTAACAAAACAAGCAGCTACGCTCACTGATATCCGTAAAAAAGCAG
CTGTCACATTAGAAAAACAAATTAAACAAGAATTAAATCAACTTTATATGGAGAAAGCCATTTTTAGTGTGCGTTTTGAA
GCAAACAAAATGGAACTAACAGAATTGGGACAAGATAGCGTCGTCTTTTATATGTCAACAAATCCAGGAGAACCATTAAA
ACCATTAGCAAAAATTGCTTCTGGCGGAGAGTTATCCAGAATGATGTTAGCTTTAAAAACCATTTTCTCTAGACACCAAG
GTATTACATCAATTATTTTCGATGAAGTTGATACCGGAGTAAGTGGACGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTCGGCTCGCAAGTACTATGTATCAGTCATTTGCCTCAAGTAGCAGCAATGGCGAACCACCATTACTACAT
TACAAAAAAAGTCCAAAATAAACGTACAACGACTTCCGTTACAGTGCTTAAAGGAGTAGAAAAAGTAGAAGAAATCAGCC
GAATGATTGCTGGTATAGAAGTCACCGAACTAACAAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D5RB09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.604

100

0.538

Multiple sequence alignment