Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   YSQ_RS02070 Genome accession   NZ_CP007183
Coordinates   423420..424388 (-) Length   322 a.a.
NCBI ID   WP_002799191.1    Uniprot ID   A0A0Q2L7K2
Organism   Campylobacter coli RM1875     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 418420..429388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSQ_RS02050 (YSQ_02075) - 419935..420567 (-) 633 WP_002838982.1 membrane protein -
  YSQ_RS02055 (YSQ_02080) - 420733..421722 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  YSQ_RS02060 (YSQ_02085) - 421737..422492 (-) 756 WP_002785724.1 ABC transporter ATP-binding protein -
  YSQ_RS02065 (YSQ_02090) - 422489..423427 (-) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  YSQ_RS02070 (YSQ_02095) ceuB 423420..424388 (-) 969 WP_002799191.1 ABC transporter permease Machinery gene
  YSQ_RS02075 (YSQ_02100) - 424521..425414 (-) 894 WP_234888770.1 phospholipase A -
  YSQ_RS02080 (YSQ_02105) - 425513..426088 (-) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  YSQ_RS02085 (YSQ_02110) - 426151..427458 (+) 1308 WP_002838985.1 NFACT family protein -
  YSQ_RS02090 (YSQ_02115) - 427461..427799 (+) 339 WP_002838987.1 hypothetical protein -
  YSQ_RS02095 (YSQ_02120) - 427808..428533 (+) 726 WP_002838990.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35551.38 Da        Isoelectric Point: 9.5069

>NTDB_id=117205 YSQ_RS02070 WP_002799191.1 423420..424388(-) (ceuB) [Campylobacter coli RM1875]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=117205 YSQ_RS02070 WP_002799191.1 423420..424388(-) (ceuB) [Campylobacter coli RM1875]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTGCTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2L7K2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.441

100

0.894

Multiple sequence alignment