Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACLV7W_RS01300 Genome accession   NZ_OZ217346
Coordinates   260247..262226 (+) Length   659 a.a.
NCBI ID   WP_411865286.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis D22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 255247..267226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7W_RS01275 (SMID22_02560) murA 255895..257178 (+) 1284 WP_045612767.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACLV7W_RS01280 (SMID22_02570) - 257171..257359 (+) 189 WP_004241151.1 DNA-directed RNA polymerase subunit beta -
  ACLV7W_RS01285 (SMID22_02580) endA 257398..258222 (+) 825 WP_078237947.1 DNA-entry nuclease EndA Machinery gene
  ACLV7W_RS01290 (SMID22_02590) - 258490..259821 (+) 1332 WP_000390027.1 hemolysin family protein -
  ACLV7W_RS01300 (SMID22_02610) amiA 260247..262226 (+) 1980 WP_411865286.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7W_RS01305 (SMID22_02620) amiC 262293..263789 (+) 1497 WP_000759915.1 ABC transporter permease Regulator
  ACLV7W_RS01310 (SMID22_02630) amiD 263789..264715 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7W_RS01315 (SMID22_02640) amiE 264724..265791 (+) 1068 WP_000159549.1 ABC transporter ATP-binding protein Regulator
  ACLV7W_RS01320 (SMID22_02650) amiF 265802..266728 (+) 927 WP_411865287.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73029.19 Da        Isoelectric Point: 4.8883

>NTDB_id=1170416 ACLV7W_RS01300 WP_411865286.1 260247..262226(+) (amiA) [Streptococcus mitis isolate S. mitis D22]
MKKSRVFVAAGVALLATGVLVACGNSKSSDSTAPKTYGYVYSADPETLDYIISGKESTKVATSNGIDGLFTNDKYGNLTP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADKKSEALYLAETSVKGLSDYLAGNSKDFSTV
GVKAVDDYTLEYTLNQPEPYWNSKMVYSIFWPLNEEFEKSKGSDFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNEQYW
DKENVHLDTATLAYFDGSDQESLERNFTSGAYSFARLYPTSSNFSKVEESYKDNIFYTPSGAGIGGLGVNIDRQNYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTGYSAQVNGKEGAPLAVRNLFVKPDFVTAGEKTFGDLVAEKVKTYGDEWKD
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDVPVDQTSKNFVARIQSFKQSVEKVLGEENVVIDIQQISKDE
FFNATYYAANAAAEDWDLSGAVGWNPDYEDPSTYLDILKSTNSEQTKTYMGYDDPSNAAAAKVGVKDYDKLLDEAGKETS
DLNKRYEKYAAAQAWLTDSSLFLPAMSSSGATPFISRVVPFSASYSQSGDKGSNLYFKYIQLQDKVVTKADYEQAREKWI
KEKKESNEKVQKELTKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1170416 ACLV7W_RS01300 WP_411865286.1 260247..262226(+) (amiA) [Streptococcus mitis isolate S. mitis D22]
ATGAAAAAAAGTAGAGTCTTTGTTGCAGCAGGAGTTGCTTTATTGGCAACAGGTGTGTTAGTAGCTTGTGGGAATTCAAA
ATCATCTGATTCGACAGCTCCAAAAACCTATGGCTATGTCTATTCGGCTGACCCAGAAACATTAGATTATATTATTTCTG
GAAAAGAGAGTACGAAAGTGGCTACTTCAAACGGGATCGATGGCCTCTTCACAAATGACAAATACGGGAATTTGACTCCT
GCGGTTGCAGAAGACTGGTCTGTATCAAAAGATGGATTGACATATACCTACAAAATTCGTAAAGGTGTCAAATGGATGAC
ATCCGATGGTGAAGAATATGCCGAAGTGACTGCTAAAGACTTCGTGAATGGATTGAAACATGCGGCAGATAAGAAATCAG
AAGCTCTATATCTAGCTGAAACTTCTGTTAAAGGTTTATCTGATTATTTGGCTGGGAATTCAAAAGATTTCTCTACAGTA
GGTGTTAAAGCGGTTGATGACTATACTCTTGAGTATACTTTGAACCAACCAGAACCTTACTGGAACTCTAAGATGGTTTA
TTCAATTTTCTGGCCATTAAACGAAGAATTTGAAAAATCAAAAGGCTCTGATTTTGCTAAAGCGACAGATCCTACATCAT
TGCTATATAATGGACCTTTCTTGCTTAAAGGTTTGACTGCTAAATCTTCTATCGAATTTGCTAAGAACGAGCAGTACTGG
GATAAAGAGAATGTTCATTTAGATACAGCAACACTTGCATATTTTGATGGTTCGGACCAAGAATCACTTGAGCGTAACTT
TACAAGTGGAGCTTATAGTTTTGCTCGTCTTTACCCAACAAGTTCAAACTTCTCAAAGGTAGAGGAGTCATACAAGGATA
ATATTTTCTACACTCCGTCAGGAGCTGGTATTGGAGGTTTAGGTGTAAATATCGATCGACAAAATTACAAATATACATCT
AAAACGACAGATGAAGAGAAAACATCTACTAAGAAAGCTCTTCTTAACAAAGACTTCCGCCAAGCCTTGAACTTTGCCTT
TGACCGTACAGGTTATTCTGCTCAAGTTAACGGTAAAGAAGGTGCTCCTCTCGCAGTTCGTAATTTATTTGTGAAACCAG
ACTTTGTGACTGCAGGCGAAAAAACTTTCGGTGACTTGGTTGCTGAAAAAGTTAAGACTTATGGAGATGAGTGGAAAGAT
GTAAACTTTGCTGATGGTCAAGACGGTCTCTTTAACGCTGACAAAGCTAAAGCAGAATTTGCTAAAGCTAAAACTGCTCT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATGTTCCAGTAGACCAAACCTCTAAAAACTTTGTCGCACGGATTC
AGTCGTTCAAACAATCAGTTGAAAAAGTTTTAGGCGAAGAAAATGTTGTCATCGATATTCAACAAATTTCTAAAGATGAA
TTCTTTAATGCGACTTATTATGCTGCTAATGCGGCAGCTGAGGATTGGGATCTTTCAGGTGCGGTTGGATGGAATCCTGA
CTATGAAGATCCATCAACTTACCTTGATATCCTTAAATCAACTAATAGTGAGCAAACGAAAACTTATATGGGGTATGATG
ACCCATCAAATGCAGCTGCAGCTAAAGTTGGTGTGAAAGATTACGATAAATTGCTTGATGAAGCTGGAAAAGAAACAAGT
GATCTTAACAAACGTTATGAAAAATATGCTGCTGCTCAAGCTTGGTTGACAGACAGTTCACTCTTCTTACCAGCTATGTC
TTCTAGTGGTGCTACACCATTCATTTCTCGTGTTGTACCATTCTCAGCTTCTTATAGCCAATCTGGAGACAAAGGTTCAA
ATCTCTACTTCAAATATATTCAGTTACAAGACAAAGTTGTAACAAAGGCTGATTATGAACAAGCTCGTGAGAAATGGATT
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGACTAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

68.134

100

0.681
  amiA3 Streptococcus thermophilus LMD-9

67.879

100

0.68
  amiA3 Streptococcus thermophilus LMG 18311

67.576

100

0.677

Multiple sequence alignment