Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ACLV7W_RS01320 Genome accession   NZ_OZ217346
Coordinates   265802..266728 (+) Length   308 a.a.
NCBI ID   WP_411865287.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis D22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 260802..271728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7W_RS01305 (SMID22_02620) amiC 262293..263789 (+) 1497 WP_000759915.1 ABC transporter permease Regulator
  ACLV7W_RS01310 (SMID22_02630) amiD 263789..264715 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7W_RS01315 (SMID22_02640) amiE 264724..265791 (+) 1068 WP_000159549.1 ABC transporter ATP-binding protein Regulator
  ACLV7W_RS01320 (SMID22_02650) amiF 265802..266728 (+) 927 WP_411865287.1 ATP-binding cassette domain-containing protein Regulator
  ACLV7W_RS01325 (SMID22_02660) - 267171..268148 (+) 978 WP_261203416.1 ABC transporter substrate-binding protein -
  ACLV7W_RS01330 (SMID22_02670) - 268160..269053 (+) 894 WP_411865288.1 ABC transporter permease -
  ACLV7W_RS01335 (SMID22_02680) - 269066..269869 (+) 804 WP_000157668.1 ABC transporter ATP-binding protein -
  ACLV7W_RS01340 (SMID22_02690) - 269914..271353 (-) 1440 WP_411865289.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34803.84 Da        Isoelectric Point: 6.3159

>NTDB_id=1170420 ACLV7W_RS01320 WP_411865287.1 265802..266728(+) (amiF) [Streptococcus mitis isolate S. mitis D22]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFEGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYEIDKPSMVEIRPGHYVWANQAELARYQQGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1170420 ACLV7W_RS01320 WP_411865287.1 265802..266728(+) (amiF) [Streptococcus mitis isolate S. mitis D22]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCAGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCAGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTCAATGATACAAGTAATGGAGATATCATTTTTGAAGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCAGAATTGATTCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCATCATCTGTTCAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCGGATGAGCCCATTTCAGCCTTGGACGTTTCTGTGCGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAACTCGGTTTGACCTATCTCTTCATCGCCCATGACTTGTCTGTCG
TTCGTTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCATCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTATT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGATTGATAAACCATCCATGGTTGAAATCCGTCCAGGTCATTATGTTT
GGGCTAACCAAGCCGAATTGGCACGTTATCAACAAGGGTTAAACTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.246

99.026

0.844
  amiF Streptococcus salivarius strain HSISS4

85.246

99.026

0.844
  amiF Streptococcus thermophilus LMD-9

84.918

99.026

0.841

Multiple sequence alignment