Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACLV7W_RS01310 Genome accession   NZ_OZ217346
Coordinates   263789..264715 (+) Length   308 a.a.
NCBI ID   WP_000103691.1    Uniprot ID   A0A3R9MHI7
Organism   Streptococcus mitis isolate S. mitis D22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 258789..269715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7W_RS01300 (SMID22_02610) amiA 260247..262226 (+) 1980 WP_411865286.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7W_RS01305 (SMID22_02620) amiC 262293..263789 (+) 1497 WP_000759915.1 ABC transporter permease Regulator
  ACLV7W_RS01310 (SMID22_02630) amiD 263789..264715 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7W_RS01315 (SMID22_02640) amiE 264724..265791 (+) 1068 WP_000159549.1 ABC transporter ATP-binding protein Regulator
  ACLV7W_RS01320 (SMID22_02650) amiF 265802..266728 (+) 927 WP_411865287.1 ATP-binding cassette domain-containing protein Regulator
  ACLV7W_RS01325 (SMID22_02660) - 267171..268148 (+) 978 WP_261203416.1 ABC transporter substrate-binding protein -
  ACLV7W_RS01330 (SMID22_02670) - 268160..269053 (+) 894 WP_411865288.1 ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34541.57 Da        Isoelectric Point: 9.6860

>NTDB_id=1170418 ACLV7W_RS01310 WP_000103691.1 263789..264715(+) (amiD) [Streptococcus mitis isolate S. mitis D22]
MSTIDKEKFQFVKRDDFASEAIDAPAYSYWGSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1170418 ACLV7W_RS01310 WP_000103691.1 263789..264715(+) (amiD) [Streptococcus mitis isolate S. mitis D22]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAGCCATTGATGCGCCAGCTTA
TTCATACTGGGGTTCAGTGTTTAGACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGTAAGGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCTATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGCGTGATGATGGAAGTTTACAACGTCATCTCAAACATCCCATCTCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTCGCCATGAGTGTAACAACATGGATTGGAATTGCCTTCAT
GATTCGTGTGCAAATCTTGCGTTACCGTGACTTGGAATACAACTTGGCGTCACGTACTCTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCATTCTTCGGTCTTGGATTACCAATTACAGTGCCAAGTTTGGGTCGTTTGATTTCAGATTATTC
ACAAAACGTAACAACTAATGCTTACTTGTTCTGGATTCCATTGACAACTCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9MHI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment