Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ACLV7W_RS01305 Genome accession   NZ_OZ217346
Coordinates   262293..263789 (+) Length   498 a.a.
NCBI ID   WP_000759915.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis D22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 257293..268789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7W_RS01285 (SMID22_02580) endA 257398..258222 (+) 825 WP_078237947.1 DNA-entry nuclease EndA Machinery gene
  ACLV7W_RS01290 (SMID22_02590) - 258490..259821 (+) 1332 WP_000390027.1 hemolysin family protein -
  ACLV7W_RS01300 (SMID22_02610) amiA 260247..262226 (+) 1980 WP_411865286.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7W_RS01305 (SMID22_02620) amiC 262293..263789 (+) 1497 WP_000759915.1 ABC transporter permease Regulator
  ACLV7W_RS01310 (SMID22_02630) amiD 263789..264715 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7W_RS01315 (SMID22_02640) amiE 264724..265791 (+) 1068 WP_000159549.1 ABC transporter ATP-binding protein Regulator
  ACLV7W_RS01320 (SMID22_02650) amiF 265802..266728 (+) 927 WP_411865287.1 ATP-binding cassette domain-containing protein Regulator
  ACLV7W_RS01325 (SMID22_02660) - 267171..268148 (+) 978 WP_261203416.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55788.31 Da        Isoelectric Point: 9.3386

>NTDB_id=1170417 ACLV7W_RS01305 WP_000759915.1 262293..263789(+) (amiC) [Streptococcus mitis isolate S. mitis D22]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTADKRDNYENTVYERMGYIEYYDTKELQEKAS
QMDASVTVEANDTNKAIYEKYIKQIGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNINLGDSYPTYANSPVLQVITQGQGQTKTSQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVANYGKDDPYTATESNYQYPSMIASSAVVGLIGLVISYAIAVPLGSAMARFKNTWIDSFSTGF
LTFLMALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1170417 ACLV7W_RS01305 WP_000759915.1 262293..263789(+) (amiC) [Streptococcus mitis isolate S. mitis D22]
ATGAAGAAATATATTTTTATGCGTGTCTTGCGGTCATTGGTTTCTATCTTCTTAGTAACAACCTTGACTTACACGATTAT
CTATACAATGGTTCCTCGAAAATTGATTTTCAAACAGGATACCAACTATAACAAGATTGCGACAACTGCTGATAAGCGTG
ATAACTATGAGAACACTGTTTATGAGCGTATGGGCTATATCGAGTACTACGATACCAAGGAATTGCAAGAAAAAGCCAGC
CAGATGGATGCCTCTGTAACAGTTGAAGCTAATGACACCAACAAGGCTATCTATGAAAAATACATCAAACAAATCGGTCA
TGGTTGGACCTTGGGAGAATTTACTGAAAGTGGCCAATTCTACGCTACTCGTGAAATCCCAATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGATATTGACCATACAAATAAAATTCAAGACCCTGAAAATCCAGACTTGAAACGTTATCTT
CGTTTTGAAAACGATCCAGCTATCGGATGGTCATTGGTCGGTTCAGGTACTAAACACAAATATCTCTTGTACTTCAACAG
TCAGTTCCCATTTGTGCATCAAAACTTTGTGAACATCAATTTAGGTGACTCTTATCCAACCTATGCTAATAGCCCTGTTT
TACAGGTTATTACTCAAGGACAAGGACAAACAAAAACATCTCAAGTTCAGTTCCCAACAGGTAAGAAAACTTCTTCTGTA
AATATTTACTCAAGAACCTATAAATCACCTAGTCAGGCTGATTCTCGTGAAGTAGCAAACTACGGAAAAGATGATCCTTA
TACAGCTACAGAAAGTAACTACCAATATCCTTCAATGATTGCCAGCTCTGCTGTTGTTGGATTGATCGGTTTGGTGATTT
CTTATGCGATTGCCGTGCCACTTGGTTCAGCTATGGCTCGCTTCAAGAATACTTGGATTGATAGCTTCTCAACAGGGTTT
TTGACCTTCTTGATGGCCCTTCCAACCATTGCTTTGGTTTACATTGTTCGTTTGATTGGATCATCAATTGGTCTTCCAGA
TTCATTCCCTATTTTGGGTGCTGGAGATTGGCGTTCGTATGTTTTACCAGCAGTTATCCTTGGTTTGTTGGGTGCTCCTG
GTACAGCTATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCTCGTGCCAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCTGTTAT
CGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCTTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTTGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACTTCTTTTGGGAGAT
ATTTGGATGACGATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.707

100

0.767
  amiC Streptococcus thermophilus LMG 18311

76.506

100

0.765
  amiC Streptococcus thermophilus LMD-9

76.104

100

0.761

Multiple sequence alignment