Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   ACLV7A_RS01110 Genome accession   NZ_OZ217344
Coordinates   211863..212276 (+) Length   137 a.a.
NCBI ID   WP_411863365.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis E22     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 206863..217276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7A_RS01070 (SMIE22_02070) - 206921..207979 (+) 1059 WP_084886478.1 zinc-dependent alcohol dehydrogenase family protein -
  ACLV7A_RS01075 (SMIE22_02080) - 208129..208494 (+) 366 WP_045606653.1 DUF1033 family protein -
  ACLV7A_RS01080 (SMIE22_02090) comGA/cglA/cilD 208569..209510 (+) 942 WP_411863363.1 competence type IV pilus ATPase ComGA Machinery gene
  ACLV7A_RS01085 (SMIE22_02100) comGB/cglB 209458..210474 (+) 1017 WP_411864201.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACLV7A_RS01090 (SMIE22_02110) comGC/cglC 210476..210799 (+) 324 WP_000738649.1 competence type IV pilus major pilin ComGC Machinery gene
  ACLV7A_RS01095 (SMIE22_02120) comGD/cglD 210762..211196 (+) 435 WP_411863364.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACLV7A_RS01100 (SMIE22_02130) comGE/cglE 211159..211461 (+) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACLV7A_RS01105 (SMIE22_02140) comGF/cglF 211424..211885 (+) 462 WP_000250514.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACLV7A_RS01110 (SMIE22_02150) comGG/cglG 211863..212276 (+) 414 WP_411863365.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACLV7A_RS01115 (SMIE22_02160) - 212309..212896 (+) 588 WP_411863366.1 class I SAM-dependent methyltransferase -
  ACLV7A_RS01120 (SMIE22_02170) comYH 212957..213910 (+) 954 WP_411863367.1 class I SAM-dependent methyltransferase Machinery gene
  ACLV7A_RS01125 (SMIE22_02180) - 213961..215151 (+) 1191 WP_000167777.1 acetate kinase -
  ACLV7A_RS01130 (SMIE22_02190) rnpA 215299..215670 (+) 372 WP_000739245.1 ribonuclease P protein component -
  ACLV7A_RS01135 (SMIE22_02200) - 215645..216469 (+) 825 WP_218757961.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15872.41 Da        Isoelectric Point: 10.3040

>NTDB_id=1170258 ACLV7A_RS01110 WP_411863365.1 211863..212276(+) (comGG/cglG) [Streptococcus mitis isolate S. mitis E22]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLIAFAMAKRTKDKVEQESGEQVFNLGQVSYQNKK
TSLVTTVRTPKSQYEFLFPSVKIKEEKTDKKEKVATDSSEKVEKKKSEEKVEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1170258 ACLV7A_RS01110 WP_411863365.1 211863..212276(+) (comGG/cglG) [Streptococcus mitis isolate S. mitis E22]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTATGCAGTCACTATAGCAGCCATTTTTAGCCTTTTGTTACA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTACGCTTTAAATAAAGAAAAGTTAATCGCTTTTGCCATGGCCA
AGCGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGTTATCAAAACAAGAAA
ACAAGCTTAGTGACGACGGTTCGTACGCCTAAGAGCCAATATGAGTTCCTGTTTCCTTCCGTCAAAATAAAAGAAGAGAA
AACAGATAAAAAGGAAAAGGTAGCGACCGATTCAAGCGAAAAAGTAGAGAAGAAAAAATCAGAAGAGAAGGTTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis SK321

91.241

100

0.912

  comGG/cglG Streptococcus mitis NCTC 12261

92.562

88.321

0.818

  comGG/cglG Streptococcus pneumoniae Rx1

94.017

85.401

0.803

  comGG/cglG Streptococcus pneumoniae D39

94.017

85.401

0.803

  comGG/cglG Streptococcus pneumoniae R6

94.017

85.401

0.803

  comGG/cglG Streptococcus pneumoniae TIGR4

94.017

85.401

0.803


Multiple sequence alignment