Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   ACLV7Q_RS01085 Genome accession   NZ_OZ217341
Coordinates   203906..204319 (+) Length   137 a.a.
NCBI ID   WP_218757957.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis C22     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 198906..209319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS01045 (SMIC22_01990) - 198962..200020 (+) 1059 WP_218757952.1 zinc-dependent alcohol dehydrogenase family protein -
  ACLV7Q_RS01050 (SMIC22_02000) - 200170..200535 (+) 366 WP_045606653.1 DUF1033 family protein -
  ACLV7Q_RS01055 (SMIC22_02010) comGA/cglA/cilD 200612..201553 (+) 942 WP_218757953.1 competence type IV pilus ATPase ComGA Machinery gene
  ACLV7Q_RS01060 (SMIC22_02020) comGB/cglB 201501..202517 (+) 1017 WP_218757970.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACLV7Q_RS01065 (SMIC22_02030) comGC/cglC 202519..202842 (+) 324 WP_218757954.1 competence type IV pilus major pilin ComGC Machinery gene
  ACLV7Q_RS01070 (SMIC22_02040) comGD/cglD 202805..203239 (+) 435 WP_218757955.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACLV7Q_RS01075 (SMIC22_02050) comGE/cglE 203202..203504 (+) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACLV7Q_RS01080 (SMIC22_02060) comGF/cglF 203467..203928 (+) 462 WP_218757956.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACLV7Q_RS01085 (SMIC22_02070) comGG/cglG 203906..204319 (+) 414 WP_218757957.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACLV7Q_RS01090 (SMIC22_02080) - 204352..204939 (+) 588 WP_218757958.1 class I SAM-dependent methyltransferase -
  ACLV7Q_RS01095 (SMIC22_02090) comYH 205000..205953 (+) 954 WP_218757959.1 class I SAM-dependent methyltransferase Machinery gene
  ACLV7Q_RS01100 (SMIC22_02100) - 206004..207194 (+) 1191 WP_218757960.1 acetate kinase -
  ACLV7Q_RS01105 (SMIC22_02110) rnpA 207344..207715 (+) 372 WP_000739245.1 ribonuclease P protein component -
  ACLV7Q_RS01110 (SMIC22_02120) - 207690..208514 (+) 825 WP_218757961.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15940.41 Da        Isoelectric Point: 10.3385

>NTDB_id=1170008 ACLV7Q_RS01085 WP_218757957.1 203906..204319(+) (comGG/cglG) [Streptococcus mitis isolate S. mitis C22]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQIFNLGQVSYQNKK
TSLVTRVRTPKSQYEFIFPSVKIKEEKRDKKEEVVTDSSNQAEKKKSEEKVEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1170008 ACLV7Q_RS01085 WP_218757957.1 203906..204319(+) (comGG/cglG) [Streptococcus mitis isolate S. mitis C22]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCTTATATGCAGTCACCATAGCAGCCATTTTTAGTCTTTTGTTACA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTACGCTTTAAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGATCTTTAATCTGGGTCAGGTGAGCTATCAAAATAAGAAA
ACAAGCTTGGTGACAAGGGTTCGTACGCCTAAGAGCCAATATGAATTCATCTTTCCTTCCGTAAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGTAACTGATTCAAGTAATCAAGCAGAGAAGAAAAAATCAGAAGAGAAGGTCGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis SK321

92.701

100

0.927

  comGG/cglG Streptococcus mitis NCTC 12261

93.443

89.051

0.832

  comGG/cglG Streptococcus pneumoniae Rx1

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae D39

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae R6

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

85.401

0.81


Multiple sequence alignment