Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7H_RS01525 Genome accession   NZ_OZ217340
Coordinates   268476..270455 (+) Length   659 a.a.
NCBI ID   WP_411866175.1    Uniprot ID   -
Organism   Streptococcus oralis isolate S. oralis A22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 263476..275455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7H_RS01500 (SORA22_02910) murA 264173..265456 (+) 1284 WP_411866173.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACLV7H_RS01505 (SORA22_02920) - 265443..265637 (+) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  ACLV7H_RS01510 (SORA22_02930) endA 265678..266502 (+) 825 WP_045593588.1 DNA/RNA non-specific endonuclease Machinery gene
  ACLV7H_RS01515 (SORA22_02940) - 266638..267969 (+) 1332 WP_411866174.1 hemolysin family protein -
  ACLV7H_RS01525 (SORA22_02960) amiA3 268476..270455 (+) 1980 WP_411866175.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7H_RS01530 (SORA22_02970) amiC 270522..272018 (+) 1497 WP_411866176.1 ABC transporter permease Regulator
  ACLV7H_RS01535 (SORA22_02980) amiD 272018..272944 (+) 927 WP_411866177.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7H_RS01540 (SORA22_02990) amiE 272953..274020 (+) 1068 WP_411866178.1 ABC transporter ATP-binding protein Regulator
  ACLV7H_RS01545 (SORA22_03000) amiF 274031..274960 (+) 930 WP_411866179.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72798.93 Da        Isoelectric Point: 4.8375

>NTDB_id=1169939 ACLV7H_RS01525 WP_411866175.1 268476..270455(+) (amiA3) [Streptococcus oralis isolate S. oralis A22]
MKKSRVFVAAGVALLAAGVLAACGSSKSSDSTAPKNYGYVYSADPETLDYLISGKQSTKIATSNGIDGLFTNDKYGNLVP
AVAEDWSVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKHAADKKSEAIYLAENSVKGLSDYLAGNTKDFSSV
GVKAVDDYTLEYTLNQPEPYWNSKMAYSIFWPLNEEFEKSKGADFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNENYW
DKDNVHIDKVTLAFYDGSDQESIERNFTSGAYSYARLFPTSSNYSKVEETYKENIFYTPSGPGIGGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQVNGKEGAPRAVRNLFVKPDFVSAGEKTFGDLVTEKMAAYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDVPVDQTAKNYIARIQSFKQSVETVLGEGNVVIDIQQVSKDE
FTNITYYAANAAAEDWDLSGAVGWNPDYEDPSTYLDILKTTNVEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAAKETS
DLNVRYEKYAAAQAWLTDSSLILPAMSSTGAAPFISRVVPFSASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1169939 ACLV7H_RS01525 WP_411866175.1 268476..270455(+) (amiA3) [Streptococcus oralis isolate S. oralis A22]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGAGTTGCTTTATTAGCGGCAGGAGTACTAGCTGCTTGCGGTTCTTCAAA
ATCATCTGATTCAACAGCACCAAAAAATTATGGCTATGTTTATTCAGCTGACCCAGAAACGTTGGATTACCTCATTTCAG
GGAAACAAAGTACTAAGATTGCTACTTCAAACGGTATCGATGGTCTCTTCACAAATGACAAGTATGGGAATCTAGTTCCT
GCAGTTGCAGAAGACTGGTCCGTTTCAAAAGACGGTTTGACTTATACCTACAAGATTCGTAAAGGAGTCAAATGGTTCAC
ATCTGACGGAGAAGAGTATGCTGAAGTGACAGCCAAAGACTTTGTGAATGGTTTGAAACACGCAGCTGATAAAAAATCAG
AAGCAATTTACCTAGCAGAAAATTCTGTTAAAGGATTGTCTGATTATTTAGCAGGTAATACAAAAGACTTTTCTTCAGTA
GGTGTGAAAGCAGTTGATGATTATACTCTTGAGTATACTTTGAACCAACCAGAACCATACTGGAACTCTAAGATGGCCTA
CTCAATCTTCTGGCCATTGAACGAAGAATTTGAAAAATCAAAAGGGGCTGACTTTGCTAAAGCGACTGACCCTACATCAT
TGCTTTACAATGGACCATTCTTACTGAAAGGTTTGACTGCTAAGTCTTCTATTGAGTTCGCTAAGAATGAAAATTACTGG
GACAAAGATAATGTTCACATTGATAAAGTAACCCTTGCTTTCTATGATGGGTCAGACCAAGAATCAATTGAACGTAACTT
TACAAGTGGAGCTTATAGCTATGCCCGTCTCTTCCCAACAAGTTCAAACTACTCTAAGGTAGAAGAAACCTACAAGGAAA
ATATCTTCTACACCCCATCAGGACCTGGTATTGGTGGTTTGGGTGTGAATATTGACCGCCAAGGTTACAAATACACTTCT
AAGACAACTGACGAAGAGAAGACTTCAACTAAGAAAGCACTTCTTAACAAGGACTTCCGTCAGGCCTTGAACTTTGCCTT
TGACCGTACGTCTTACTCAGCTCAAGTAAATGGTAAAGAAGGTGCTCCTCGTGCCGTTCGTAACCTCTTTGTAAAACCTG
ACTTTGTCTCTGCAGGTGAAAAAACTTTTGGTGACTTGGTAACTGAAAAGATGGCTGCTTACGGTGATGAGTGGAAGAAT
GTAAACTTTGCGGATGGTCAAGATGGACTCTTCAACGCCGATAAAGCCAAAGCTGAATTTGCCAAAGCCAAAACAGCATT
GGAAGCAGAAGGTGTAAAATTCCCTATCCATTTGGATGTTCCAGTAGACCAAACAGCTAAAAACTATATCGCACGTATTC
AATCCTTCAAACAATCCGTTGAAACAGTGCTTGGAGAAGGCAATGTAGTCATCGATATCCAACAAGTTTCTAAAGATGAG
TTTACTAATATTACCTACTATGCGGCGAATGCAGCAGCAGAAGACTGGGATCTCTCAGGTGCCGTTGGATGGAACCCTGA
CTATGAAGATCCATCAACTTACCTTGATATCTTGAAGACAACGAATGTTGAACAAACAAAAACATACATGGGTTACGAAG
GTGCAGATAATGCTGCAGCAGCTCAAGTTGGTTTGAAAGAATACGATAAGCTAGTTGATGAAGCTGCTAAAGAAACAAGC
GACTTGAATGTTCGTTATGAAAAATACGCGGCTGCTCAAGCTTGGTTGACAGATAGCTCACTCATCTTGCCAGCTATGTC
ATCAACTGGTGCTGCACCATTCATTTCTCGTGTTGTGCCATTCTCTGCATCATATAGCCAATCTGGAGATAAAGGCTCAG
ATGTATACTTCAAGTATATTCAGTTACAAGATAAGGTTGTAACAAAAGCTGACTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

67.576

100

0.677
  amiA3 Streptococcus thermophilus LMG 18311

67.424

100

0.675
  amiA Streptococcus salivarius strain HSISS4

67.375

100

0.674

Multiple sequence alignment