Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACLV7H_RS01535 Genome accession   NZ_OZ217340
Coordinates   272018..272944 (+) Length   308 a.a.
NCBI ID   WP_411866177.1    Uniprot ID   -
Organism   Streptococcus oralis isolate S. oralis A22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 267018..277944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7H_RS01525 (SORA22_02960) amiA3 268476..270455 (+) 1980 WP_411866175.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7H_RS01530 (SORA22_02970) amiC 270522..272018 (+) 1497 WP_411866176.1 ABC transporter permease Regulator
  ACLV7H_RS01535 (SORA22_02980) amiD 272018..272944 (+) 927 WP_411866177.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7H_RS01540 (SORA22_02990) amiE 272953..274020 (+) 1068 WP_411866178.1 ABC transporter ATP-binding protein Regulator
  ACLV7H_RS01545 (SORA22_03000) amiF 274031..274960 (+) 930 WP_411866179.1 ATP-binding cassette domain-containing protein Regulator
  ACLV7H_RS01550 (SORA22_03010) - 275049..276488 (-) 1440 WP_411866180.1 TrkH family potassium uptake protein -
  ACLV7H_RS01555 (SORA22_03020) trkA 276492..277838 (-) 1347 WP_411866181.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34647.69 Da        Isoelectric Point: 9.0162

>NTDB_id=1169941 ACLV7H_RS01535 WP_411866177.1 272018..272944(+) (amiD) [Streptococcus oralis isolate S. oralis A22]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVIMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRIMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1169941 ACLV7H_RS01535 WP_411866177.1 272018..272944(+) (amiD) [Streptococcus oralis isolate S. oralis A22]
ATGTCAACTATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGACGCCCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAGTTTCTAAAGAAAAAATCAACAGTCATTATGTTGGGGATTTTGGTTGCCATTA
TCTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGACTTCAACGATGTAAGTAAGGTCAATGACTTCTCTGCTCGT
TTTATCAAACCCAATGCTGAACATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGACGGGGTTTGGTTTGGTGC
GCGTAATTCAATTCTTATCTCTGTAATTGCCACTTTTATCAATCTTGTGATCGGGGTTATTGTTGGTGGGATTTGGGGAA
TTTCAAAATCCGTTGACCGTATCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTGGAATACAACCTTGCTTCTCAAACCCTTGGAACACCAACCTTTAAAA
TCATCGTTAAAAACATCATGCCGCAATTGGTATCTGTTATTGTTTCTACGATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTACCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTGTTCTGGATTCCGTTGACAACCTTGATCTTGGTATCCCTATCTCTTTTTGTTG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.766

100

0.838
  amiD Streptococcus thermophilus LMG 18311

82.143

100

0.821
  amiD Streptococcus thermophilus LMD-9

82.143

100

0.821

Multiple sequence alignment