Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   ACLV7H_RS01540 Genome accession   NZ_OZ217340
Coordinates   272953..274020 (+) Length   355 a.a.
NCBI ID   WP_411866178.1    Uniprot ID   -
Organism   Streptococcus oralis isolate S. oralis A22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 267953..279020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7H_RS01525 (SORA22_02960) amiA3 268476..270455 (+) 1980 WP_411866175.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7H_RS01530 (SORA22_02970) amiC 270522..272018 (+) 1497 WP_411866176.1 ABC transporter permease Regulator
  ACLV7H_RS01535 (SORA22_02980) amiD 272018..272944 (+) 927 WP_411866177.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7H_RS01540 (SORA22_02990) amiE 272953..274020 (+) 1068 WP_411866178.1 ABC transporter ATP-binding protein Regulator
  ACLV7H_RS01545 (SORA22_03000) amiF 274031..274960 (+) 930 WP_411866179.1 ATP-binding cassette domain-containing protein Regulator
  ACLV7H_RS01550 (SORA22_03010) - 275049..276488 (-) 1440 WP_411866180.1 TrkH family potassium uptake protein -
  ACLV7H_RS01555 (SORA22_03020) trkA 276492..277838 (-) 1347 WP_411866181.1 Trk system potassium transporter TrkA -
  ACLV7H_RS01560 (SORA22_03040) - 278237..278740 (+) 504 WP_411866182.1 tRNA (cytidine(34)-2'-O)-methyltransferase -

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 39545.13 Da        Isoelectric Point: 4.6417

>NTDB_id=1169942 ACLV7H_RS01540 WP_411866178.1 272953..274020(+) (amiE) [Streptococcus oralis isolate S. oralis A22]
MTKESNVILTARDIVVEFDVRDKVLTAIRGVSLDLIEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAQGSIDYRGQDL
TALTSNKEWEKIRGAKIATIFQDPMTSLDPINTIGSQITEVIVKHQGKTAKEAKEMAIDYMNKVGIPDAEKRYDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKTLQNEYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGELYSIPGTPPSLYTELKGDAFALRSDYAMQIDFEQKAPQFSVTDTHWAK
TWLLHENAPKVEKPGVIADLHDKIRDKMGFAHLED

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1169942 ACLV7H_RS01540 WP_411866178.1 272953..274020(+) (amiE) [Streptococcus oralis isolate S. oralis A22]
ATGACAAAAGAAAGTAATGTAATTTTGACTGCTCGTGATATTGTCGTGGAATTTGACGTTCGTGATAAAGTTCTGACGGC
TATCCGAGGAGTTTCTCTGGACCTGATTGAAGGGGAAGTTCTTGCCCTAGTAGGTGAGTCAGGTTCTGGTAAATCTGTAT
TAACAAAAACCTTTACAGGGATGTTAGAAGACAATGGACGTATTGCCCAAGGAAGTATTGACTATCGTGGGCAAGACTTG
ACAGCTCTTACTTCTAACAAGGAATGGGAGAAGATTCGTGGTGCTAAAATTGCAACCATCTTCCAAGATCCTATGACAAG
TTTGGACCCAATCAATACAATTGGTAGCCAAATCACTGAAGTTATCGTTAAACACCAAGGAAAAACAGCCAAGGAAGCCA
AAGAGATGGCAATCGACTATATGAACAAGGTCGGAATTCCAGATGCTGAAAAACGTTATGACGAGTATCCTTTCCAGTAT
TCTGGAGGAATGCGTCAACGGATTGTTATCGCAATTGCCCTTGCATGTCGTCCAGATATCTTAATCTGTGACGAGCCGAC
AACGGCCCTTGATGTAACCATTCAAGCGCAAATCATTGATTTGCTTAAAACCTTGCAAAATGAGTACCACTTTACCATTA
TCTTTATCACCCATGACCTTGGTGTGGTAGCAAGTATTGCAGATAAGGTAGCGGTTATGTATGCTGGTGAAATTGTAGAA
TACGGAACTGTCGAGGAAGTCTTCTACGACCCACGTCATCCATATACTTGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGATGATAAAGGGGAATTGTACTCTATCCCAGGAACGCCACCGTCTCTTTATACTGAGTTGAAAGGTGATGCCTTTGCCC
TTCGTTCAGATTATGCGATGCAAATTGACTTTGAACAGAAAGCACCACAGTTTTCAGTTACTGATACCCACTGGGCTAAG
ACTTGGTTGCTTCATGAGAATGCTCCTAAAGTTGAAAAACCTGGAGTCATTGCAGATTTGCATGACAAGATTCGTGATAA
AATGGGCTTTGCTCATCTAGAAGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

85.915

100

0.859

  amiE Streptococcus thermophilus LMG 18311

83.944

100

0.839

  amiE Streptococcus thermophilus LMD-9

83.944

100

0.839

  oppD Streptococcus mutans UA159

54.261

99.155

0.538


Multiple sequence alignment