Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AB3226_RS16790 Genome accession   NZ_OZ061318
Coordinates   3692024..3694099 (+) Length   691 a.a.
NCBI ID   WP_367373861.1    Uniprot ID   -
Organism   Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3687024..3699099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3226_RS16770 comM 3689239..3690303 (+) 1065 WP_367373857.1 pilus assembly protein PilM Machinery gene
  AB3226_RS16775 - 3690303..3690869 (+) 567 WP_367373858.1 PilN domain-containing protein -
  AB3226_RS16780 pilO 3690866..3691486 (+) 621 WP_367373859.1 type 4a pilus biogenesis protein PilO -
  AB3226_RS16785 - 3691483..3692010 (+) 528 WP_367373860.1 pilus assembly protein PilP -
  AB3226_RS16790 pilQ 3692024..3694099 (+) 2076 WP_367373861.1 type IV pilus secretin PilQ Machinery gene
  AB3226_RS16795 aroK 3694104..3694622 (+) 519 WP_052965071.1 shikimate kinase AroK -
  AB3226_RS16800 aroB 3694773..3695873 (+) 1101 WP_367373862.1 3-dehydroquinate synthase -
  AB3226_RS16805 - 3695884..3697470 (+) 1587 WP_367373863.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 75023.13 Da        Isoelectric Point: 5.7482

>NTDB_id=1165819 AB3226_RS16790 WP_367373861.1 3692024..3694099(+) (pilQ) [Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854]
MNRIFSTFGISLWIAFLSPMVVAANLKALDVAALPGDRVELKLSFDGPPPQPHGYTTEQPARIALDLPGVTSQLASKNRD
LGGGNARSATVVEAKDRTRLIISLTQLTPYNARVEGNNLFVVVGQGAGNKAPKPITNAPRAATATPAPARANAPVGKAIR
GVDFQRGTQGEGNVIIDLSDPSIAPDIQERDGKIIVGFTKTQLPERLRVRLDVKDFATPVQFVNASATGDRAIISIEPSG
AFDYSTYQTDNKLTVSIRAMTVDDLHKRNTERFAYTGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQN
VPWDQALDLVLKTKDLDKRKIGNVLLVAPASEIASRERQELESQKQIAELAPLRRELLQVNYAKAKDIAELFKSVTSDDA
KTDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSAQKGNWNTSGVNG
SSTTIGTPGSTSTNSPFVDLGTSGNTSGIGIAFITDNVLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQ
EASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSNT
QSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSH

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=1165819 AB3226_RS16790 WP_367373861.1 3692024..3694099(+) (pilQ) [Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854]
ATGAACAGGATTTTCTCAACCTTCGGTATTTCGCTATGGATAGCGTTTCTGTCGCCGATGGTAGTGGCGGCCAACCTCAA
AGCGCTGGATGTCGCTGCGTTGCCCGGTGACCGTGTCGAGTTGAAGTTGTCGTTCGATGGGCCGCCGCCGCAGCCCCACG
GTTACACGACAGAGCAGCCTGCGCGGATTGCGCTGGACCTGCCGGGGGTTACCAGTCAGCTGGCGAGCAAGAATCGGGAC
CTGGGCGGCGGCAATGCCCGCAGCGCCACGGTGGTTGAGGCCAAGGACCGCACACGGCTGATCATCAGCCTGACTCAATT
GACTCCATACAACGCCCGCGTCGAAGGCAACAATCTGTTCGTGGTCGTCGGGCAAGGGGCCGGTAACAAGGCGCCCAAGC
CGATCACCAACGCACCGCGCGCAGCCACTGCGACACCAGCGCCCGCCAGGGCCAATGCGCCCGTGGGCAAAGCCATCCGG
GGCGTGGATTTCCAGCGCGGCACCCAGGGTGAGGGCAATGTGATCATTGATCTGTCGGATCCGTCGATCGCCCCGGACAT
CCAGGAACGCGATGGCAAAATCATCGTCGGTTTCACCAAGACCCAACTGCCTGAACGGTTGCGTGTACGCCTCGACGTCA
AGGATTTCGCTACGCCGGTGCAGTTCGTCAACGCCAGCGCCACGGGCGACCGGGCCATTATCAGTATCGAGCCCAGTGGC
GCCTTCGATTATTCGACCTACCAGACCGACAACAAACTGACCGTCAGCATCCGGGCGATGACTGTCGATGACTTGCACAA
GCGCAACACCGAACGCTTTGCCTACACCGGCGAAAAACTCTCGCTGAATTTTCAAGACATCGATGTGCGCTCGGTGCTGC
AACTGATCGCCGATTTCACCAACCTCAATCTGGTGGCCAGCGACACGGTGCAGGGCGGCATCACGTTGCGTCTGCAGAAT
GTGCCGTGGGATCAAGCGCTGGACCTGGTGCTGAAAACCAAAGATTTAGACAAGCGCAAGATCGGTAACGTGCTCCTTGT
GGCGCCCGCCTCTGAAATCGCCTCTCGTGAGCGTCAGGAGTTGGAGTCGCAAAAACAGATCGCGGAACTGGCGCCGCTGC
GTCGTGAGCTGCTGCAAGTCAACTACGCCAAGGCCAAGGACATCGCTGAGTTGTTCAAGTCGGTGACTAGTGACGACGCA
AAAACCGATGAGCGTGGCTCGATCACTGTCGATGAGCGGACCAACAACATCATTGCCTACCAGACCCAGGATCGCCTCGA
CGAGCTGCGTCGCATTGTTGCGCAGCTGGATATCCCGGTGCGTCAGGTGATGATCGAGGCACGCATCGTCGAAGCCAACG
TCGATTACGACAAAAGCCTAGGCGTACGCTGGGGTGGTTCGGCGCAGAAGGGTAACTGGAACACATCCGGGGTCAACGGC
TCTTCGACCACCATTGGTACTCCGGGAAGCACCAGCACTAACTCGCCGTTCGTCGACCTGGGGACCTCTGGCAACACCTC
GGGGATCGGCATCGCCTTCATTACCGACAATGTGCTGCTGGACCTTGAGCTTTCAGCCATGGAGAAAACCGGCAACGGGG
AAATCGTCTCGCAGCCCAAGGTGGTCACGTCCGACAAGGAAACCGCGAAAATCCTCAAGGGCACCGAGATTCCTTATCAG
GAAGCCAGTTCCAGCGGCGCCACCTCGGTGTCGTTCAAGGAAGCTTCGCTGTCCCTGGAAGTGACCCCGCAGATCACGCC
AGACAATCGAATCATCATGGAGGTCAAGGTCACCAAGGACGAACCGGACTACCTGAACAAAGTGCAGGATGTACCGCCGA
TCAAGAAAAACGAGGTCAACGCCAAGGTGTTGGTTAACGACGGCGAGACTATCGTCATTGGTGGGGTTTTCTCAAATACT
CAGAGCAAGGTTGTAGATAAGGTGCCATTTCTCGGTGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGTTTC
GGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAACAATCAGGCGATTGCTGTGAGTCATTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)

Bacterial type II and III secretion system protein (Secretin)

(526-682)

Secretin and TonB N terminus short domain (STN)

(303-349)

AMIN domain (AMIN)

(37-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.269

100

0.747
  comQ Acinetobacter baylyi ADP1

41.185

100

0.433
  pilQ Acinetobacter baumannii D1279779

38.482

100

0.418
  pilQ Acinetobacter baumannii strain A118

38.482

100

0.418
  pilQ Legionella pneumophila strain ERS1305867

38.576

97.54

0.376
  pilQ Legionella pneumophila strain Lp02

38.576

97.54

0.376

Multiple sequence alignment