Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB3226_RS16770 Genome accession   NZ_OZ061318
Coordinates   3689239..3690303 (+) Length   354 a.a.
NCBI ID   WP_367373857.1    Uniprot ID   -
Organism   Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3684239..3695303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3226_RS16760 - 3685044..3686312 (+) 1269 WP_007899225.1 malic enzyme-like NAD(P)-binding protein -
  AB3226_RS16765 - 3686582..3689023 (-) 2442 WP_367373856.1 penicillin-binding protein 1A -
  AB3226_RS16770 comM 3689239..3690303 (+) 1065 WP_367373857.1 pilus assembly protein PilM Machinery gene
  AB3226_RS16775 - 3690303..3690869 (+) 567 WP_367373858.1 PilN domain-containing protein -
  AB3226_RS16780 pilO 3690866..3691486 (+) 621 WP_367373859.1 type 4a pilus biogenesis protein PilO -
  AB3226_RS16785 - 3691483..3692010 (+) 528 WP_367373860.1 pilus assembly protein PilP -
  AB3226_RS16790 pilQ 3692024..3694099 (+) 2076 WP_367373861.1 type IV pilus secretin PilQ Machinery gene
  AB3226_RS16795 aroK 3694104..3694622 (+) 519 WP_052965071.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38105.55 Da        Isoelectric Point: 4.8109

>NTDB_id=1165818 AB3226_RS16770 WP_367373857.1 3689239..3690303(+) (comM) [Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPASAVVEKNIAELEGVGQALARVLSKAKTSLRNVAV
AVAGSAVITKTIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVQGVSPRNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATQLAASQERLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTV
EQAGLAKKQGGLPDDYVSEVLQPFRDALVQQVSRSLQFFFASGQYNSVDHILLAGGTASVPGLERLIEQRLGTPTQVANP
FSNMTLSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1165818 AB3226_RS16770 WP_367373857.1 3689239..3690303(+) (comM) [Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854]
GTGCTAGGACTCTTCAATAAAAAAGCCAATACGCTTTTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTGCTGGAGCT
AAGTCGCCAGGGCGACCGCTATCGGGTCGAGGCCTATGCGGTCGAACCGCTGCCCGCCAGTGCCGTGGTCGAGAAAAATA
TCGCCGAGCTCGAAGGTGTGGGGCAGGCTCTTGCGCGGGTGCTATCCAAGGCCAAAACCAGCCTCAGGAACGTTGCCGTG
GCGGTGGCCGGTTCAGCGGTGATCACCAAGACCATCGAGATGGACGCCGGCCTTTCCGACGACGAGATGGAAAACCAGCT
GAAGATCGAGGCCGATCAGTACATTCCTTATCCTCTGGATGAAGTGGCGATCGATTTCGAAGTGCAGGGCGTGTCGCCGC
GCAACCCCGAACGGGTCAATGTGCTGCTGGCGGCCTGTCGCAAGGAAAACGTCGAGGTCCGCGAAGCGGCCCTGGCTCTG
GCCGGGCTGACCGCGCGAGTGGTCGACGTCGAAGCCTATGCCCTGGAGCGGTCGTTCGGCCTGCTGGCAACCCAGTTGGC
TGCTTCTCAGGAGCGTCTGACCGTGGCGGTGGTCGATATCGGTGCCACCATGACCACCCTGAGCGTGCTGCACAATGGCC
GGATCATCTACACCCGCGAACAATTGTTCGGCGGCCGTCAATTGACGGAAGAGATCCAGCGTCGTTATGGCCTGACGGTC
GAGCAGGCGGGGCTGGCGAAGAAGCAGGGTGGTTTGCCGGACGATTACGTCAGCGAGGTCTTGCAGCCGTTTCGTGATGC
GTTGGTGCAGCAGGTGTCGCGTTCGTTGCAGTTTTTCTTTGCCTCCGGCCAGTACAACTCGGTCGATCACATCCTCTTGG
CCGGCGGCACCGCCTCGGTCCCCGGGCTGGAGCGATTGATCGAGCAGCGACTGGGTACGCCGACCCAGGTCGCCAATCCA
TTCTCCAACATGACCCTGAGCAGCAAGGTCAACGCCGGGGCCCTGGCGAGCGATGCCCCGGCACTGATGATTGCCTGCGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

57.062

100

0.571
  pilM Acinetobacter baumannii D1279779

56.78

100

0.568
  comM Acinetobacter baylyi ADP1

54.52

100

0.545
  pilM Legionella pneumophila strain ERS1305867

49.153

100

0.492

Multiple sequence alignment