Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RG40_RS18665 Genome accession   NZ_CP010150
Coordinates   3575377..3576114 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain D7     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3570377..3581114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG40_RS18635 (RG40_17685) yfiL 3570536..3570901 (-) 366 WP_024166617.1 DUF2799 domain-containing protein -
  RG40_RS18640 (RG40_17690) aroF 3571110..3572180 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  RG40_RS18645 (RG40_17695) tyrA 3572191..3573312 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  RG40_RS18650 (RG40_17700) pheA 3573355..3574515 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  RG40_RS25705 pheL 3574614..3574661 (-) 48 WP_010723158.1 phe operon leader peptide -
  RG40_RS18655 (RG40_17705) raiA 3574765..3575106 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RG40_RS18665 (RG40_17715) comL 3575377..3576114 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  RG40_RS18670 (RG40_17720) rluD 3576249..3577229 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RG40_RS18675 (RG40_17725) yfiH 3577226..3577957 (+) 732 WP_023155416.1 purine nucleoside phosphorylase YfiH -
  RG40_RS18680 (RG40_17730) clpC 3578087..3580660 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=116281 RG40_RS18665 WP_000197686.1 3575377..3576114(-) (comL) [Escherichia coli strain D7]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=116281 RG40_RS18665 WP_000197686.1 3575377..3576114(-) (comL) [Escherichia coli strain D7]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment