Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACLMBQ_RS19570 Genome accession   NZ_OY829390
Coordinates   4257726..4259798 (+) Length   690 a.a.
NCBI ID   WP_247844890.1    Uniprot ID   -
Organism   MAG: Marinobacter alexandrii isolate 78648b50-2abc-418f-b92f-8dc6f39ea282     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4252726..4264798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLMBQ_RS19550 (U5725_RS19550) pilM 4254872..4255936 (+) 1065 WP_247844884.1 pilus assembly protein PilM Machinery gene
  ACLMBQ_RS19555 (U5725_RS19555) - 4255936..4256502 (+) 567 WP_247844885.1 PilN domain-containing protein -
  ACLMBQ_RS19560 (U5725_RS19560) - 4256499..4257110 (+) 612 WP_247844886.1 type 4a pilus biogenesis protein PilO -
  ACLMBQ_RS19565 (U5725_RS19565) - 4257113..4257661 (+) 549 WP_322003955.1 pilus assembly protein PilP -
  ACLMBQ_RS19570 (U5725_RS19570) pilQ 4257726..4259798 (+) 2073 WP_247844890.1 type IV pilus secretin PilQ Machinery gene
  ACLMBQ_RS19575 (U5725_RS19575) aroK 4259937..4260503 (+) 567 WP_138441920.1 shikimate kinase AroK -
  ACLMBQ_RS19580 (U5725_RS19580) aroB 4260496..4261590 (+) 1095 WP_138441921.1 3-dehydroquinate synthase -
  ACLMBQ_RS19585 (U5725_RS19585) - 4261634..4263124 (+) 1491 WP_322002472.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 690 a.a.        Molecular weight: 74343.44 Da        Isoelectric Point: 4.3574

>NTDB_id=1162092 ACLMBQ_RS19570 WP_247844890.1 4257726..4259798(+) (pilQ) [MAG: Marinobacter alexandrii isolate 78648b50-2abc-418f-b92f-8dc6f39ea282]
MFKKLNVYVSVIAFGLLSGLANAVTLEDVSFSSLSGDRLEVKLAFDGEPPEPTGYTIERPARIAVDLRDTRNGLGSRSIP
LGSGNAQSMTVVETKDRTRLIFNLVELVPYDTVRSGNSLVMTLGGDTAETETSVTASTASTSTAASSSSRADTLAGVDFR
RGKNGEGRVVVDLGSESTPVDLSELGGKIRLTMSGVSVPENLRRRLDVTDFATPVNRIDTFVQDGNAIVEIRPEGNYDYI
AYQSGNEFTVSVEKLTEQEAEARREEKFPYTGEKLSLNFQDIEVRSVLQLIADFTGLNLVASDTVGGSITLRLQNVPWDQ
ALDLILKTKGLDKRQIGNVLLVAPADEIAAREKLELETTKQIAELAPVRLDIIQVNYAKAADVVALIEADKELISDRGFV
SSDVRTNTISVRETTEKLEEIRRLVTTWDVPVRQVSIEARIVRAQTNVAENLGIRWGGAAYNVSGDNVFSVGGSQQTVSE
ARDAAGNGNTTAITFPGALAVDLGVTGEGASSFALGWGSDDFLVDLELSALESDGQAEVVSQPRVVTADRQTASIKSGEE
IPYQEASSSGATSVSFKEAVLSLEVTPQITPDDKIIMDLVVNQDSRGEVTAGIPSINTNEVTTQVLVGNGETVVLGGIFQ
SEVATQTTKTPFLGDIPYLGRLFKRTEHVDERSELLIFITPKILKNDLIR

Nucleotide


Download         Length: 2073 bp        

>NTDB_id=1162092 ACLMBQ_RS19570 WP_247844890.1 4257726..4259798(+) (pilQ) [MAG: Marinobacter alexandrii isolate 78648b50-2abc-418f-b92f-8dc6f39ea282]
ATGTTTAAAAAACTCAATGTATACGTCAGCGTAATTGCTTTTGGGTTGTTATCCGGCCTGGCCAATGCGGTCACGCTGGA
AGACGTGTCATTCTCATCGCTGTCGGGAGATCGCTTGGAAGTAAAGCTTGCCTTTGATGGCGAGCCGCCCGAACCGACCG
GGTATACGATTGAGCGCCCCGCACGTATCGCTGTTGATCTGCGCGACACCAGAAATGGGCTTGGCAGTCGCAGCATACCG
CTGGGCTCCGGTAACGCTCAGAGCATGACAGTGGTTGAAACCAAGGACCGAACCCGCCTGATCTTCAATCTGGTAGAACT
GGTTCCCTATGACACGGTTCGAAGTGGGAATTCCCTGGTGATGACTCTGGGAGGCGATACAGCTGAAACTGAAACCTCAG
TTACTGCATCGACTGCCTCGACCTCTACAGCGGCGTCTTCTTCCTCTCGTGCGGATACCCTTGCTGGGGTGGATTTTCGT
CGCGGCAAAAACGGAGAAGGCCGAGTTGTGGTCGATCTGGGCAGCGAAAGTACTCCGGTGGACTTGTCTGAGCTCGGTGG
AAAGATTCGCCTGACCATGTCAGGTGTTTCAGTGCCGGAAAATCTTCGTCGGCGTCTCGATGTGACGGATTTCGCGACAC
CGGTTAATCGAATCGACACTTTTGTCCAAGATGGAAATGCTATCGTCGAAATTCGACCGGAAGGTAATTACGACTACATC
GCGTATCAGTCTGGTAACGAGTTTACGGTCAGTGTCGAAAAGCTGACCGAGCAGGAAGCGGAAGCTCGTCGTGAGGAGAA
ATTCCCGTACACGGGCGAAAAACTTTCCCTCAACTTCCAGGATATTGAAGTTCGGTCTGTACTTCAGTTGATTGCAGACT
TCACCGGGTTAAACCTCGTGGCCAGCGATACGGTGGGCGGCAGCATTACTCTGAGGCTCCAAAACGTACCCTGGGACCAA
GCGTTGGACCTGATCCTGAAAACTAAAGGTCTCGACAAGCGGCAAATTGGCAATGTCCTCTTGGTCGCACCTGCCGATGA
GATCGCTGCGCGTGAGAAGCTGGAGCTTGAAACCACGAAGCAGATTGCAGAACTCGCCCCGGTTCGTCTGGATATCATCC
AAGTGAACTACGCCAAGGCTGCGGATGTGGTGGCTTTGATCGAGGCTGACAAAGAGCTGATTTCTGACCGCGGTTTTGTG
TCGTCGGATGTGAGGACCAATACCATCAGCGTGCGGGAAACCACGGAGAAGTTGGAAGAGATTCGCCGACTGGTTACTAC
TTGGGACGTTCCAGTTCGTCAGGTATCTATTGAAGCCCGAATAGTTCGTGCTCAGACCAATGTTGCCGAGAACTTGGGTA
TTCGCTGGGGCGGCGCAGCCTACAATGTGAGTGGCGATAACGTTTTTTCTGTCGGTGGGTCTCAACAAACCGTCAGCGAA
GCTCGAGATGCGGCTGGGAATGGCAATACTACCGCGATCACCTTTCCGGGAGCTCTGGCAGTTGATCTGGGTGTAACGGG
TGAGGGGGCATCCTCTTTCGCGCTAGGTTGGGGCAGTGACGACTTCCTGGTCGACCTGGAACTGTCTGCGCTCGAAAGCG
ACGGTCAGGCGGAAGTCGTATCGCAGCCGCGAGTGGTGACTGCGGACCGCCAGACAGCTTCGATCAAATCTGGTGAAGAG
ATTCCGTATCAGGAAGCTTCCTCAAGCGGTGCCACCTCCGTGTCCTTCAAGGAAGCCGTGTTGTCGCTGGAGGTAACTCC
GCAAATTACCCCCGACGACAAGATCATCATGGATCTGGTGGTTAATCAGGACTCGCGTGGTGAAGTAACTGCGGGTATTC
CGTCAATCAACACCAACGAGGTCACCACCCAGGTGTTGGTTGGTAATGGCGAAACCGTGGTGTTGGGCGGTATCTTCCAG
TCGGAGGTTGCTACGCAAACGACCAAGACGCCATTCCTCGGTGATATTCCGTACCTTGGTCGTCTGTTCAAGCGGACTGA
ACATGTTGATGAGCGCAGTGAGCTGCTGATCTTCATCACGCCCAAGATCCTGAAGAACGATCTGATCCGCTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(530-685)

Bacterial type II/III secretion system short domain (Secretin_N)

(372-434)

AMIN domain (AMIN)

(37-122)

Secretin and TonB N terminus short domain (STN)

(298-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

50.14

100

0.519
  pilQ Acinetobacter baumannii D1279779

40.083

100

0.419
  pilQ Acinetobacter baumannii strain A118

40.083

100

0.419
  comQ Acinetobacter baylyi ADP1

40.621

100

0.417
  pilQ Legionella pneumophila strain Lp02

40.882

98.551

0.403
  pilQ Legionella pneumophila strain ERS1305867

40.882

98.551

0.403

Multiple sequence alignment