Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   U8955_RS07255 Genome accession   NZ_OY769914
Coordinates   1442475..1443065 (-) Length   196 a.a.
NCBI ID   WP_000613470.1    Uniprot ID   A0A139PFB2
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1437475..1448065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS07230 (SDENT7746_07275) - 1438166..1438930 (-) 765 WP_038805585.1 ABC transporter ATP-binding protein -
  U8955_RS07235 (SDENT7746_07280) - 1438930..1439886 (-) 957 WP_038805586.1 branched-chain amino acid ABC transporter permease -
  U8955_RS07240 (SDENT7746_07285) - 1439890..1440759 (-) 870 WP_038805587.1 branched-chain amino acid ABC transporter permease -
  U8955_RS07245 (SDENT7746_07290) - 1440878..1442038 (-) 1161 WP_000726138.1 ABC transporter substrate-binding protein -
  U8955_RS07250 (SDENT7746_07295) - 1442127..1442396 (-) 270 WP_000462107.1 YlbG family protein -
  U8955_RS07255 (SDENT7746_07300) clpP 1442475..1443065 (-) 591 WP_000613470.1 ATP-dependent Clp protease proteolytic subunit ClpP Regulator
  U8955_RS07260 (SDENT7746_07305) upp 1443246..1443875 (-) 630 WP_025169005.1 uracil phosphoribosyltransferase -
  U8955_RS07265 (SDENT7746_07310) - 1443964..1444431 (-) 468 WP_038805588.1 deoxycytidylate deaminase -
  U8955_RS07270 (SDENT7746_07315) - 1444450..1445007 (-) 558 WP_038805589.1 TetR/AcrR family transcriptional regulator -
  U8955_RS07275 (SDENT7746_07320) - 1445132..1445977 (+) 846 WP_038805590.1 DegV family protein -
  U8955_RS07280 (SDENT7746_07325) - 1446035..1447216 (+) 1182 WP_038805672.1 NAD(P)/FAD-dependent oxidoreductase -
  U8955_RS07285 (SDENT7746_07330) - 1447230..1447751 (+) 522 WP_038805591.1 DUF1697 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21348.39 Da        Isoelectric Point: 4.5654

>NTDB_id=1161732 U8955_RS07255 WP_000613470.1 1442475..1443065(-) (clpP) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILATNSGK
SVEQIHADAERDYWMSAQETLEYGFIDEIMANNSLS

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1161732 U8955_RS07255 WP_000613470.1 1442475..1443065(-) (clpP) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCCTATGACATTTACTCTCGCCTTCTGAAAGACCGCAT
CATCATGCTAACAGGTCCAGTTGAAGACAACATGGCCAACTCCGTTATCGCCCAGTTGCTCTTCTTGGATGCCCAAGACA
GCACAAAAGATATTTACCTTTATGTCAATACACCTGGAGGATCTGTTTCAGCTGGTTTGGCAATCGTTGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACTATCGTTATGGGAATGGCTGCATCCATGGGGACTGTCATAGCATCAAGTGGAGCAAA
AGGCAAACGCTTCATGCTTCCAAATGCAGAGTACATGATTCACCAACCAATGGGTGGTACAGGTGGTGGTACCCAACAGA
CAGATATGGCAATCGCTGCAGAGCACTTGCTCAAAACTCGTAAGACTTTGGAGCAAATCCTTGCGACTAACTCAGGTAAA
TCAGTTGAGCAAATTCATGCAGATGCAGAACGTGATTACTGGATGAGTGCCCAAGAAACGCTCGAATATGGCTTCATTGA
TGAAATCATGGCTAACAATTCTTTGAGCTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139PFB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

95.408

100

0.954
  clpP Streptococcus pneumoniae D39

95.408

100

0.954
  clpP Streptococcus pneumoniae R6

95.408

100

0.954
  clpP Streptococcus pneumoniae TIGR4

95.408

100

0.954
  clpP Streptococcus pyogenes MGAS315

92.308

99.49

0.918
  clpP Streptococcus pyogenes JRS4

92.308

99.49

0.918
  clpP Streptococcus thermophilus LMD-9

90.769

99.49

0.903
  clpP Streptococcus thermophilus LMG 18311

90.769

99.49

0.903
  clpP Streptococcus mutans UA159

88.205

99.49

0.878
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.179

99.49

0.867
  clpP Lactococcus lactis subsp. cremoris KW2

86.667

99.49

0.862
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571
  clpP Bacillus subtilis subsp. subtilis str. 168

57.292

97.959

0.561

Multiple sequence alignment