Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACI6OU_RS04765 Genome accession   NZ_OY737369
Coordinates   909688..910926 (-) Length   412 a.a.
NCBI ID   WP_056957472.1    Uniprot ID   -
Organism   Fructilactobacillus sanfranciscensis strain ACADC 3378     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 904688..915926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6OU_RS04755 (FSACADC3378_DKGBJENM_00945) - 907090..907896 (-) 807 WP_014082168.1 TIGR00282 family metallophosphoesterase -
  ACI6OU_RS04760 (FSACADC3378_DKGBJENM_00946) rny 907984..909543 (-) 1560 WP_103434141.1 ribonuclease Y -
  ACI6OU_RS04765 (FSACADC3378_DKGBJENM_00947) cinA 909688..910926 (-) 1239 WP_056957472.1 competence/damage-inducible protein A Machinery gene
  ACI6OU_RS04770 (FSACADC3378_DKGBJENM_00948) pgsA 910945..911532 (-) 588 WP_041817852.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACI6OU_RS04775 (FSACADC3378_DKGBJENM_00949) - 911603..912487 (-) 885 WP_163602039.1 RodZ family helix-turn-helix domain-containing protein -
  ACI6OU_RS04780 (FSACADC3378_DKGBJENM_00950) yfmH 912558..913838 (-) 1281 WP_163602053.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACI6OU_RS04785 (FSACADC3378_DKGBJENM_00951) yfmF 913831..915093 (-) 1263 WP_056957475.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45036.43 Da        Isoelectric Point: 4.6321

>NTDB_id=1160788 ACI6OU_RS04765 WP_056957472.1 909688..910926(-) (cinA) [Fructilactobacillus sanfranciscensis strain ACADC 3378]
MNAEIITVGTEILLGEIVDTSSPFIARRLANLGIDVYFEDTVGDNYDRLESTISLAESRSDLVVLTGGLGPTEDDITKIS
LAQHLGLDLEIDKKALKKINDFYATYALGKPSNADMMAKYIEGAEILPNEKGFAVGMFLKTDACDYLVLPGPPVEMQYMF
TNFAMPKLAKLTSGSSLIDSRVLRFFGIGETELEKDLKELIDNQTNPTLATYAKCNEVTLRITASGETKSEIKELIDNME
KRVLAIVGQYFYGYGDNNSLEKVVVNLLKNKELSITAAESLTSGMFQSRIGNVSGASEVFPGGFVTYSADAKEQLLNIPT
EIIKKYGVVSSETAEYMAKNSKDKMKTDIGVSFTGVAGPDSLEGHPAGFFWVGLALPNGQVITKSVNFAKARNEVRDYAT
KTGFKLIYDNLK

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1160788 ACI6OU_RS04765 WP_056957472.1 909688..910926(-) (cinA) [Fructilactobacillus sanfranciscensis strain ACADC 3378]
ATGAATGCAGAAATAATTACTGTTGGAACAGAAATTTTACTTGGTGAAATTGTTGATACTAGTTCACCATTTATTGCCAG
AAGATTAGCTAATCTCGGAATTGATGTTTATTTTGAAGACACAGTTGGTGATAATTATGATCGTTTAGAGTCAACTATCA
GTTTGGCCGAAAGTCGGAGTGATTTAGTTGTTTTAACCGGAGGACTTGGTCCAACGGAAGATGACATTACAAAAATATCT
TTGGCACAACATTTAGGACTAGATTTAGAAATTGATAAAAAGGCATTAAAAAAAATTAATGATTTCTATGCAACATATGC
TCTTGGAAAACCAAGCAATGCTGATATGATGGCTAAATACATTGAAGGCGCTGAAATCTTACCAAATGAAAAAGGTTTTG
CTGTCGGAATGTTTTTAAAAACTGATGCATGTGATTATTTGGTATTACCAGGGCCACCAGTAGAAATGCAATATATGTTT
ACTAATTTTGCTATGCCAAAATTAGCTAAATTAACCAGCGGTAGTTCATTAATTGACTCACGCGTACTTCGTTTCTTTGG
AATTGGCGAAACTGAATTAGAAAAGGATTTAAAAGAACTAATTGATAATCAAACTAATCCAACCCTTGCAACTTACGCTA
AATGTAATGAAGTAACTCTTCGAATCACTGCTAGTGGAGAAACTAAGTCTGAGATTAAAGAATTAATTGACAACATGGAA
AAGCGTGTCTTAGCGATTGTTGGTCAATATTTCTATGGTTACGGAGATAATAACTCCCTTGAAAAAGTTGTAGTTAATTT
GTTAAAAAACAAAGAATTATCAATTACAGCTGCAGAATCATTAACAAGTGGAATGTTCCAAAGTCGGATTGGAAATGTTT
CAGGAGCGTCTGAGGTATTCCCAGGTGGCTTCGTAACTTATTCTGCCGATGCTAAAGAACAATTATTGAATATTCCAACT
GAGATAATTAAAAAATACGGGGTTGTTTCTTCTGAAACTGCCGAATATATGGCAAAGAATTCCAAAGATAAAATGAAAAC
TGATATTGGGGTTTCATTTACTGGGGTTGCTGGACCAGATAGTTTAGAAGGACATCCTGCTGGATTTTTCTGGGTTGGTT
TAGCGTTACCAAATGGTCAAGTAATTACTAAAAGTGTTAACTTTGCAAAAGCGAGAAATGAAGTTCGTGATTATGCAACT
AAGACAGGATTTAAATTAATATATGACAATTTAAAGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(4-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

48.227

100

0.495
  cinA Streptococcus mitis SK321

48.227

100

0.495
  cinA Streptococcus pneumoniae Rx1

47.031

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.031

100

0.481
  cinA Streptococcus pneumoniae R6

47.031

100

0.481
  cinA Streptococcus pneumoniae D39

46.793

100

0.478
  cinA Streptococcus mutans UA159

46.747

100

0.471
  cinA Bacillus subtilis subsp. subtilis str. 168

42.963

98.301

0.422

Multiple sequence alignment