Detailed information NTG1160555

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: ACI6O7_RS11360
• Genome accession: NZ_OY725152
• Coordinates: 2272420..2272866 (-)
• Length: 148 a.a.
• NCBI ID: WP_029344525.1
• Uniprot ID: A0AAP4JUI5
• Organism: Lactococcus lactis strain IMDO WA12L8
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2267420..2277866

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI6O7_RS11325 (LLWA12L8_FAMOGCFE_02270)	-	2267536..2267913 (-)	378	WP_033900715.1	pyridoxamine 5'-phosphate oxidase family protein	-
ACI6O7_RS11330 (LLWA12L8_FAMOGCFE_02271)	-	2268118..2268984 (+)	867	WP_237579725.1	RluA family pseudouridine synthase	-
ACI6O7_RS11335 (LLWA12L8_FAMOGCFE_02272)	-	2269023..2269832 (-)	810	WP_014570791.1	metal ABC transporter permease	-
ACI6O7_RS11340 (LLWA12L8_FAMOGCFE_02273)	-	2269825..2270562 (-)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
ACI6O7_RS11345 (LLWA12L8_FAMOGCFE_02274)	-	2270739..2271581 (-)	843	WP_278218023.1	metal ABC transporter substrate-binding protein	-
ACI6O7_RS11350 (LLWA12L8_FAMOGCFE_02275)	-	2271578..2272015 (-)	438	WP_201248645.1	zinc-dependent MarR family transcriptional regulator	-
ACI6O7_RS11355 (LLWA12L8_FAMOGCFE_02276)	comGG	2272097..2272381 (-)	285	WP_404378643.1	competence type IV pilus minor pilin ComGG	Machinery gene
ACI6O7_RS11360 (LLWA12L8_FAMOGCFE_02277)	comGF	2272420..2272866 (-)	447	WP_029344525.1	competence type IV pilus minor pilin ComGF	Machinery gene
ACI6O7_RS11365 (LLWA12L8_FAMOGCFE_02278)	comGE	2272829..2273125 (-)	297	WP_010906316.1	competence type IV pilus minor pilin ComGE	Machinery gene
ACI6O7_RS11370 (LLWA12L8_FAMOGCFE_02279)	comGD	2273097..2273528 (-)	432	WP_341275869.1	competence type IV pilus minor pilin ComGD	Machinery gene
ACI6O7_RS11375 (LLWA12L8_FAMOGCFE_02280)	comGC	2273488..2273757 (-)	270	WP_023349160.1	competence type IV pilus major pilin ComGC	Machinery gene
ACI6O7_RS11380 (LLWA12L8_FAMOGCFE_02281)	comGB	2273885..2274958 (-)	1074	WP_010906319.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACI6O7_RS11385 (LLWA12L8_FAMOGCFE_02282)	comGA	2274852..2275790 (-)	939	WP_143459428.1	competence type IV pilus ATPase ComGA	Machinery gene

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17111.91 Da
• Isoelectric Point: 8.6780

>NTDB_id=1160555 ACI6O7_RS11360 WP_029344525.1 2272420..2272866(-) (comGF) [Lactococcus lactis strain IMDO WA12L8]
MERKLCDLNFKVKAFTLLECLVALLAISGSVLVISGLTKMLKEQVAISQSDSIKDWQIFCQQMRFELSGTKLDRVEQNFL
YVTKDKKLRFGFMSDDFRKTDDKGQGYQPMLYDIKAAKIQATKNLITIRIDFNQGGERTFIYQFPEDT

Nucleotide

• Length: 447 bp

>NTDB_id=1160555 ACI6O7_RS11360 WP_029344525.1 2272420..2272866(-) (comGF) [Lactococcus lactis strain IMDO WA12L8]
ATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAAAGCATTTACCTTGTTGGAGTGTTTGGTGGCACTTCTTGCAAT
TTCTGGTTCAGTCCTTGTCATCTCAGGTTTAACAAAGATGTTGAAAGAACAAGTGGCGATTAGTCAAAGTGATAGCATAA
AAGATTGGCAAATTTTCTGTCAGCAAATGCGTTTTGAACTCTCAGGAACAAAATTAGATAGGGTAGAACAGAATTTTCTG
TATGTAACTAAAGATAAAAAACTAAGGTTTGGTTTTATGAGTGATGATTTCCGGAAGACTGATGACAAAGGTCAGGGTTA
TCAGCCAATGCTTTATGATATAAAAGCGGCTAAGATTCAAGCTACTAAAAATTTAATAACCATAAGAATTGATTTTAATC
AAGGAGGTGAAAGAACATTTATTTATCAATTTCCAGAAGATACGTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (48-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Lactococcus lactis subsp. cremoris KW2	76.259	93.919	0.716
comYF	Streptococcus mutans UA140	48.227	95.27	0.459
comYF	Streptococcus mutans UA159	47.518	95.27	0.453
comGF/cglF	Streptococcus mitis SK321	43.066	92.568	0.399
comGF/cglF	Streptococcus pneumoniae Rx1	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae D39	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae R6	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae TIGR4	40.426	95.27	0.385
comGF/cglF	Streptococcus mitis NCTC 12261	41.606	92.568	0.385