Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ACI6O7_RS11370 Genome accession   NZ_OY725152
Coordinates   2273097..2273528 (-) Length   143 a.a.
NCBI ID   WP_341275869.1    Uniprot ID   -
Organism   Lactococcus lactis strain IMDO WA12L8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2268097..2278528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6O7_RS11330 (LLWA12L8_FAMOGCFE_02271) - 2268118..2268984 (+) 867 WP_237579725.1 RluA family pseudouridine synthase -
  ACI6O7_RS11335 (LLWA12L8_FAMOGCFE_02272) - 2269023..2269832 (-) 810 WP_014570791.1 metal ABC transporter permease -
  ACI6O7_RS11340 (LLWA12L8_FAMOGCFE_02273) - 2269825..2270562 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  ACI6O7_RS11345 (LLWA12L8_FAMOGCFE_02274) - 2270739..2271581 (-) 843 WP_278218023.1 metal ABC transporter substrate-binding protein -
  ACI6O7_RS11350 (LLWA12L8_FAMOGCFE_02275) - 2271578..2272015 (-) 438 WP_201248645.1 zinc-dependent MarR family transcriptional regulator -
  ACI6O7_RS11355 (LLWA12L8_FAMOGCFE_02276) comGG 2272097..2272381 (-) 285 WP_404378643.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACI6O7_RS11360 (LLWA12L8_FAMOGCFE_02277) comGF 2272420..2272866 (-) 447 WP_029344525.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACI6O7_RS11365 (LLWA12L8_FAMOGCFE_02278) comGE 2272829..2273125 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACI6O7_RS11370 (LLWA12L8_FAMOGCFE_02279) comGD 2273097..2273528 (-) 432 WP_341275869.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACI6O7_RS11375 (LLWA12L8_FAMOGCFE_02280) comGC 2273488..2273757 (-) 270 WP_023349160.1 competence type IV pilus major pilin ComGC Machinery gene
  ACI6O7_RS11380 (LLWA12L8_FAMOGCFE_02281) comGB 2273885..2274958 (-) 1074 WP_010906319.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACI6O7_RS11385 (LLWA12L8_FAMOGCFE_02282) comGA 2274852..2275790 (-) 939 WP_143459428.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16562.59 Da        Isoelectric Point: 9.6891

>NTDB_id=1160557 ACI6O7_RS11370 WP_341275869.1 2273097..2273528(-) (comGD) [Lactococcus lactis strain IMDO WA12L8]
MIRTKMKNEILMTRAFTLLESLLVLLIISFITTLFSLEIIQTVHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQ
ELICEDRSITIPKEVVVKDFTVKFDDKGGNSSLQKLTIFLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1160557 ACI6O7_RS11370 WP_341275869.1 2273097..2273528(-) (comGD) [Lactococcus lactis strain IMDO WA12L8]
ATGATCAGAACAAAAATGAAGAACGAAATTTTAATGACTAGAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGAT
TATTTCTTTTATCACAACTCTTTTTTCTTTAGAAATAATACAAACAGTCCATCTTTTTAAGGGAGAACTGTTTGTTCTCC
AGTTTGAAAATTTCTATAAAAGGAGTCAAGAAGATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAA
GAATTAATCTGTGAAGATAGAAGTATCACAATTCCAAAGGAGGTAGTAGTTAAAGATTTTACAGTTAAATTTGATGATAA
GGGAGGGAATTCTAGCTTACAAAAACTCACAATTTTTTTGCCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAG
GCAGTGGAAAATTTAAAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

66.434

100

0.664
  comYD Streptococcus gordonii str. Challis substr. CH1

39.716

98.601

0.392
  comYD Streptococcus mutans UA140

40.625

89.51

0.364
  comYD Streptococcus mutans UA159

40.625

89.51

0.364

Multiple sequence alignment