Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   QOR49_RS01110 Genome accession   NZ_OX460938
Coordinates   188883..189311 (+) Length   142 a.a.
NCBI ID   WP_000793382.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-318     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 183883..194311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR49_RS01095 - 186440..186805 (+) 366 WP_000285373.1 DUF1033 family protein -
  QOR49_RS01100 comYA 186978..187949 (+) 972 WP_000250805.1 competence type IV pilus ATPase ComGA Machinery gene
  QOR49_RS01105 comYB 187843..188886 (+) 1044 WP_283572726.1 competence type IV pilus assembly protein ComGB Machinery gene
  QOR49_RS01110 comYD 188883..189311 (+) 429 WP_000793382.1 competence type IV pilus minor pilin ComGD Machinery gene
  QOR49_RS01115 comGE 189283..189582 (+) 300 WP_000234804.1 competence type IV pilus minor pilin ComGE -
  QOR49_RS01120 comGF 189536..189997 (+) 462 WP_001878820.1 competence type IV pilus minor pilin ComGF -
  QOR49_RS01125 comGG 189975..190346 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG -
  QOR49_RS01130 comYH 190461..191435 (+) 975 WP_001008574.1 N-6 DNA methylase Machinery gene
  QOR49_RS01135 - 191467..192660 (+) 1194 WP_000047534.1 acetate kinase -
  QOR49_RS01140 - 192812..193018 (+) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  QOR49_RS01145 - 193077..193214 (+) 138 WP_001865900.1 hypothetical protein -
  QOR49_RS01150 - 193255..193710 (+) 456 WP_000905673.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16523.18 Da        Isoelectric Point: 10.0345

>NTDB_id=1159017 QOR49_RS01110 WP_000793382.1 188883..189311(+) (comYD) [Streptococcus agalactiae isolate MRI Z2-318]
MKNLLLKCKDKKVKAFTLLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHN
YLENTYERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1159017 QOR49_RS01110 WP_000793382.1 188883..189311(+) (comYD) [Streptococcus agalactiae isolate MRI Z2-318]
ATGAAAAATTTATTGTTAAAATGTAAGGATAAGAAGGTTAAAGCATTTACACTTTTAGAGAGCCTTATTGTATTATCAGT
AGTGGCATTTATGACGTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATAT
CCTTTGAACATCTTTATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAAT
TATCTCGAAAATACTTATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACAC
TAATGGAGGGAATTCAAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAA
GTGGTAATTATCGTAAGAAAGAAAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus mutans UA140

52.273

92.958

0.486
  comYD Streptococcus mutans UA159

52.273

92.958

0.486
  comYD Streptococcus gordonii str. Challis substr. CH1

43.662

100

0.437
  comGD/cglD Streptococcus mitis NCTC 12261

41.045

94.366

0.387
  comGD/cglD Streptococcus pneumoniae TIGR4

43.307

89.437

0.387
  comGD/cglD Streptococcus mitis SK321

43.307

89.437

0.387
  comGD/cglD Streptococcus pneumoniae Rx1

42.52

89.437

0.38
  comGD/cglD Streptococcus pneumoniae D39

42.52

89.437

0.38
  comGD/cglD Streptococcus pneumoniae R6

42.52

89.437

0.38

Multiple sequence alignment