Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QNH71_RS01030 Genome accession   NZ_OX352941
Coordinates   196102..196713 (+) Length   203 a.a.
NCBI ID   WP_223375679.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160_WT     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 191102..201713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH71_RS01010 - 191261..192091 (+) 831 WP_002937312.1 carbohydrate ABC transporter permease -
  QNH71_RS01015 gtfA 192161..193609 (+) 1449 WP_074389863.1 sucrose phosphorylase -
  QNH71_RS01020 - 193681..195297 (+) 1617 WP_074389939.1 alpha-glucosidase -
  QNH71_RS01025 upp 195377..196006 (+) 630 WP_012027487.1 uracil phosphoribosyltransferase -
  QNH71_RS01030 clpP 196102..196713 (+) 612 WP_223375679.1 ATP-dependent Clp protease proteolytic subunit Regulator
  QNH71_RS01035 - 196830..197102 (+) 273 WP_002937299.1 YlbG family protein -
  QNH71_RS01040 - 197235..198404 (+) 1170 WP_024418077.1 ABC transporter substrate-binding protein -
  QNH71_RS01045 - 198605..199492 (+) 888 WP_012027482.1 branched-chain amino acid ABC transporter permease -
  QNH71_RS01050 - 199495..200442 (+) 948 WP_002937293.1 branched-chain amino acid ABC transporter permease -
  QNH71_RS01055 - 200442..201206 (+) 765 WP_002937291.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22345.73 Da        Isoelectric Point: 6.7324

>NTDB_id=1155498 QNH71_RS01030 WP_223375679.1 196102..196713(+) (clpP) [Streptococcus suis isolate 861160_WT]
MSKRSNFMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGL
AIVDTMNFIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKI
LADNSGKTVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKVK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1155498 QNH71_RS01030 WP_223375679.1 196102..196713(+) (clpP) [Streptococcus suis isolate 861160_WT]
ATCTCGAAAAGGAGTAATTTTATGATTCCAGTAGTTATTGAACAAACTAGCCGTGGTGAGCGTTCTTATGATATTTACTC
ACGCCTTTTGAAAGACCGCATTATCATGTTGACAGGACCAGTTGAGGACAACATGGCAAACTCTATCATTGCACAATTGC
TTTTCCTTGATGCCCAAGACCCTACAAAGGATATTTACCTCTATGTTAATACGCCAGGAGGATCGGTGTCAGCAGGTCTT
GCCATTGTAGACACGATGAATTTCATTAAAGCTGATGTTCAAACCATCGTTATGGGAACAGCTGCGAGCATGGGAACCAT
CATTGCATCAAGCGGTGCCAAGGGCAAACGTTTCATGTTGCCAAATGCAGAGTACATGATTCACCAGCCAATGGGTGGAA
CTGGTGGTGGTACTCAGCAAACAGATATGGCTATTGCTGCAGAACACCTATTAAAAACACGTAATAAGCTAGAAAAAATC
TTGGCAGACAACTCAGGTAAGACAGTCAAGCAAATCCATAAGGATGCGGAACGCGATTACTGGATGTCAGCTGAAGAAAC
CTTGGCTTACGGATTTATTGACCAGATTATGGACAATACAAAAGTCAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(18-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

92.347

96.552

0.892
  clpP Streptococcus pyogenes MGAS315

92.347

96.552

0.892
  clpP Streptococcus mutans UA159

90.306

96.552

0.872
  clpP Streptococcus thermophilus LMD-9

88.776

96.552

0.857
  clpP Streptococcus thermophilus LMG 18311

88.776

96.552

0.857
  clpP Streptococcus pneumoniae R6

89.231

96.059

0.857
  clpP Streptococcus pneumoniae Rx1

89.231

96.059

0.857
  clpP Streptococcus pneumoniae D39

89.231

96.059

0.857
  clpP Streptococcus pneumoniae TIGR4

89.231

96.059

0.857
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

83.756

97.044

0.813
  clpP Lactococcus lactis subsp. cremoris KW2

83.249

97.044

0.808
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

96.552

0.562
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

95.074

0.557

Multiple sequence alignment