Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | F542_RS06245 | Genome accession | NZ_CP006954 |
| Coordinates | 1372853..1373299 (+) | Length | 148 a.a. |
| NCBI ID | WP_025267127.1 | Uniprot ID | A0A4V7IAF9 |
| Organism | Bibersteinia trehalosi USDA-ARS-USMARC-188 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1367853..1378299
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F542_RS06225 (F542_12630) | rnhA | 1367957..1368415 (-) | 459 | WP_015432356.1 | ribonuclease HI | - |
| F542_RS06230 (F542_12640) | - | 1368758..1369159 (-) | 402 | WP_015432355.1 | H-NS family nucleoid-associated regulatory protein | - |
| F542_RS06235 (F542_12660) | - | 1369664..1371208 (+) | 1545 | WP_015432353.1 | Na+/H+ antiporter NhaC family protein | - |
| F542_RS06240 (F542_12670) | radA | 1371299..1372678 (-) | 1380 | WP_015432352.1 | DNA repair protein RadA | Machinery gene |
| F542_RS06245 (F542_12680) | pilA | 1372853..1373299 (+) | 447 | WP_025267127.1 | prepilin peptidase-dependent pilin | Machinery gene |
| F542_RS06250 (F542_12690) | pilB | 1373357..1374754 (+) | 1398 | WP_015432350.1 | GspE/PulE family protein | Machinery gene |
| F542_RS06255 (F542_12700) | pilC | 1374747..1375943 (+) | 1197 | WP_025267128.1 | type II secretion system F family protein | Machinery gene |
| F542_RS06260 (F542_12710) | - | 1375940..1376605 (+) | 666 | WP_025267129.1 | A24 family peptidase | - |
| F542_RS06265 (F542_12720) | coaE | 1376635..1377252 (+) | 618 | WP_042365646.1 | dephospho-CoA kinase | - |
| F542_RS06270 (F542_12730) | yacG | 1377255..1377461 (+) | 207 | WP_015432346.1 | DNA gyrase inhibitor YacG | - |
| F542_RS06275 (F542_12740) | - | 1377521..1378075 (-) | 555 | WP_025267130.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15806.99 Da Isoelectric Point: 7.5807
>NTDB_id=115200 F542_RS06245 WP_025267127.1 1372853..1373299(+) (pilA) [Bibersteinia trehalosi USDA-ARS-USMARC-188]
MKISNFRPLQKGFTLIELMIVIAIIAILATIAIPSYTNYTQKAALSEMLRASASYKSDVEICIYNTGATTNCSAGSNGIQ
AAKTESSDTKYLKSVSVTNGIINVEGKGSLDGYSYTMTPKFANNNITWSVNCTGADTGLFPANFCSSE
MKISNFRPLQKGFTLIELMIVIAIIAILATIAIPSYTNYTQKAALSEMLRASASYKSDVEICIYNTGATTNCSAGSNGIQ
AAKTESSDTKYLKSVSVTNGIINVEGKGSLDGYSYTMTPKFANNNITWSVNCTGADTGLFPANFCSSE
Nucleotide
Download Length: 447 bp
>NTDB_id=115200 F542_RS06245 WP_025267127.1 1372853..1373299(+) (pilA) [Bibersteinia trehalosi USDA-ARS-USMARC-188]
ATGAAAATTTCTAACTTTCGCCCACTTCAAAAGGGCTTTACTTTAATTGAACTCATGATCGTGATTGCGATCATTGCAAT
TCTCGCTACTATCGCGATTCCATCTTATACCAACTATACTCAAAAAGCGGCTCTCTCTGAAATGTTACGTGCTTCTGCCT
CTTACAAATCAGATGTGGAAATTTGTATTTATAACACAGGGGCTACTACCAACTGCTCCGCAGGATCAAATGGAATTCAA
GCTGCGAAAACAGAGAGTAGTGATACAAAATATTTGAAATCAGTCTCTGTCACTAATGGCATTATTAATGTTGAAGGTAA
AGGCAGCCTTGATGGATATAGCTATACCATGACACCTAAATTTGCTAACAACAATATTACTTGGTCAGTCAATTGCACTG
GGGCAGACACAGGCTTATTCCCTGCTAATTTCTGTAGTTCGGAATAA
ATGAAAATTTCTAACTTTCGCCCACTTCAAAAGGGCTTTACTTTAATTGAACTCATGATCGTGATTGCGATCATTGCAAT
TCTCGCTACTATCGCGATTCCATCTTATACCAACTATACTCAAAAAGCGGCTCTCTCTGAAATGTTACGTGCTTCTGCCT
CTTACAAATCAGATGTGGAAATTTGTATTTATAACACAGGGGCTACTACCAACTGCTCCGCAGGATCAAATGGAATTCAA
GCTGCGAAAACAGAGAGTAGTGATACAAAATATTTGAAATCAGTCTCTGTCACTAATGGCATTATTAATGTTGAAGGTAA
AGGCAGCCTTGATGGATATAGCTATACCATGACACCTAAATTTGCTAACAACAATATTACTTGGTCAGTCAATTGCACTG
GGGCAGACACAGGCTTATTCCCTGCTAATTTCTGTAGTTCGGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
71.141 |
100 |
0.716 |
| pilA | Haemophilus influenzae 86-028NP |
57.432 |
100 |
0.574 |
| pilA | Haemophilus influenzae Rd KW20 |
56.081 |
100 |
0.561 |
| comP | Acinetobacter baylyi ADP1 |
44.094 |
85.811 |
0.378 |
| pilA | Vibrio campbellii strain DS40M4 |
38.028 |
95.946 |
0.365 |