Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | F542_RS06255 | Genome accession | NZ_CP006954 |
| Coordinates | 1374747..1375943 (+) | Length | 398 a.a. |
| NCBI ID | WP_025267128.1 | Uniprot ID | - |
| Organism | Bibersteinia trehalosi USDA-ARS-USMARC-188 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1369747..1380943
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F542_RS06240 (F542_12670) | radA | 1371299..1372678 (-) | 1380 | WP_015432352.1 | DNA repair protein RadA | Machinery gene |
| F542_RS06245 (F542_12680) | pilA | 1372853..1373299 (+) | 447 | WP_025267127.1 | prepilin peptidase-dependent pilin | Machinery gene |
| F542_RS06250 (F542_12690) | pilB | 1373357..1374754 (+) | 1398 | WP_015432350.1 | GspE/PulE family protein | Machinery gene |
| F542_RS06255 (F542_12700) | pilC | 1374747..1375943 (+) | 1197 | WP_025267128.1 | type II secretion system F family protein | Machinery gene |
| F542_RS06260 (F542_12710) | - | 1375940..1376605 (+) | 666 | WP_025267129.1 | A24 family peptidase | - |
| F542_RS06265 (F542_12720) | coaE | 1376635..1377252 (+) | 618 | WP_042365646.1 | dephospho-CoA kinase | - |
| F542_RS06270 (F542_12730) | yacG | 1377255..1377461 (+) | 207 | WP_015432346.1 | DNA gyrase inhibitor YacG | - |
| F542_RS06275 (F542_12740) | - | 1377521..1378075 (-) | 555 | WP_025267130.1 | hypothetical protein | - |
| F542_RS06280 (F542_12750) | - | 1378210..1379394 (-) | 1185 | WP_025267131.1 | FAD-dependent monooxygenase | - |
| F542_RS06285 (F542_12760) | rapZ | 1379396..1380259 (-) | 864 | WP_025267132.1 | RNase adapter RapZ | - |
| F542_RS06290 (F542_12770) | - | 1380259..1380777 (-) | 519 | WP_015432342.1 | PTS sugar transporter subunit IIA | - |
Sequence
Protein
Download Length: 398 a.a. Molecular weight: 46078.66 Da Isoelectric Point: 9.8201
>NTDB_id=115202 F542_RS06255 WP_025267128.1 1374747..1375943(+) (pilC) [Bibersteinia trehalosi USDA-ARS-USMARC-188]
MFNIYEFRWQARDRFGQKQSGKQLAESTQQLEQRLQQQGFSHIRIQRNFVLPQQPKSSEITQFLQQFALLTNATIPLKLS
LTMLLENCQNSKIYLWLRAVIQQLENGFSLAQSFENMGKFLTQQEIQLIKIGEQSGELNKILSNITQNRQRSEQLNKKLK
KILFYPIMILFISISLSVLLLLFIVPKFAELYDAKNRELPLMTKILFYLSDFLQHHFIALLISIISLSLLLYFISKKTQI
LTRLKAQILSILPLFKQIHLQARLVFFCYNCGLMLQAHLRLDSVLDSFISAKSNDPILSPELSKTLARLKQGYRLSDCLP
AHLFPNEVLQMIKVGEQSGKLAEMLLQVSEIYRQKLEYQIDLLSQMLEPLLMLVIGFIVGTILIGLYLPIFDMGAMIE
MFNIYEFRWQARDRFGQKQSGKQLAESTQQLEQRLQQQGFSHIRIQRNFVLPQQPKSSEITQFLQQFALLTNATIPLKLS
LTMLLENCQNSKIYLWLRAVIQQLENGFSLAQSFENMGKFLTQQEIQLIKIGEQSGELNKILSNITQNRQRSEQLNKKLK
KILFYPIMILFISISLSVLLLLFIVPKFAELYDAKNRELPLMTKILFYLSDFLQHHFIALLISIISLSLLLYFISKKTQI
LTRLKAQILSILPLFKQIHLQARLVFFCYNCGLMLQAHLRLDSVLDSFISAKSNDPILSPELSKTLARLKQGYRLSDCLP
AHLFPNEVLQMIKVGEQSGKLAEMLLQVSEIYRQKLEYQIDLLSQMLEPLLMLVIGFIVGTILIGLYLPIFDMGAMIE
Nucleotide
Download Length: 1197 bp
>NTDB_id=115202 F542_RS06255 WP_025267128.1 1374747..1375943(+) (pilC) [Bibersteinia trehalosi USDA-ARS-USMARC-188]
ATGTTTAACATTTATGAATTTCGTTGGCAAGCACGTGATCGTTTTGGGCAAAAACAATCTGGTAAACAGCTTGCTGAAAG
CACGCAACAACTTGAGCAACGCTTGCAACAGCAGGGCTTCAGTCATATTCGCATTCAGCGGAATTTTGTTTTACCACAAC
AACCAAAATCAAGTGAAATTACACAATTCTTACAGCAATTTGCTCTGCTGACTAACGCAACTATTCCGCTAAAACTCAGC
TTAACAATGCTGTTAGAAAACTGCCAAAACAGCAAAATATATTTGTGGCTAAGAGCTGTTATTCAGCAACTTGAAAATGG
GTTCTCTCTTGCTCAATCCTTTGAAAATATGGGGAAATTTCTTACACAGCAAGAAATACAGCTCATTAAAATTGGCGAAC
AAAGTGGCGAGCTCAATAAGATTTTAAGCAATATCACACAAAATCGTCAACGTAGTGAACAACTCAATAAAAAACTCAAA
AAAATTTTATTTTATCCCATCATGATCTTGTTCATTTCCATTAGCTTATCTGTACTTCTTCTATTATTTATCGTTCCTAA
ATTCGCAGAGCTTTATGATGCTAAAAACAGAGAGCTACCGTTAATGACAAAGATTCTCTTCTACTTGTCAGATTTTTTAC
AACACCACTTTATTGCACTACTCATTTCCATTATAAGTTTAAGCTTATTACTGTATTTTATTAGTAAAAAAACTCAAATT
CTTACCCGCTTGAAAGCTCAGATTCTTTCTATTCTACCACTGTTTAAGCAAATCCATTTACAGGCTCGTTTAGTCTTTTT
CTGCTACAATTGTGGATTAATGCTGCAAGCACACTTACGTCTTGACAGCGTACTTGATAGTTTTATCTCAGCCAAAAGCA
ACGATCCTATTTTATCCCCCGAACTTTCTAAAACATTAGCTCGCTTAAAGCAAGGCTATAGGCTCTCTGACTGCTTACCT
GCCCATTTATTTCCAAATGAAGTATTACAAATGATAAAGGTAGGTGAACAAAGTGGGAAACTGGCCGAGATGTTATTACA
AGTGAGTGAAATTTATCGCCAAAAATTAGAATATCAAATTGACTTACTTTCACAAATGCTAGAGCCGCTGTTAATGCTCG
TGATAGGATTCATTGTCGGTACTATTTTAATCGGTTTATATCTACCTATTTTTGATATGGGAGCAATGATTGAATGA
ATGTTTAACATTTATGAATTTCGTTGGCAAGCACGTGATCGTTTTGGGCAAAAACAATCTGGTAAACAGCTTGCTGAAAG
CACGCAACAACTTGAGCAACGCTTGCAACAGCAGGGCTTCAGTCATATTCGCATTCAGCGGAATTTTGTTTTACCACAAC
AACCAAAATCAAGTGAAATTACACAATTCTTACAGCAATTTGCTCTGCTGACTAACGCAACTATTCCGCTAAAACTCAGC
TTAACAATGCTGTTAGAAAACTGCCAAAACAGCAAAATATATTTGTGGCTAAGAGCTGTTATTCAGCAACTTGAAAATGG
GTTCTCTCTTGCTCAATCCTTTGAAAATATGGGGAAATTTCTTACACAGCAAGAAATACAGCTCATTAAAATTGGCGAAC
AAAGTGGCGAGCTCAATAAGATTTTAAGCAATATCACACAAAATCGTCAACGTAGTGAACAACTCAATAAAAAACTCAAA
AAAATTTTATTTTATCCCATCATGATCTTGTTCATTTCCATTAGCTTATCTGTACTTCTTCTATTATTTATCGTTCCTAA
ATTCGCAGAGCTTTATGATGCTAAAAACAGAGAGCTACCGTTAATGACAAAGATTCTCTTCTACTTGTCAGATTTTTTAC
AACACCACTTTATTGCACTACTCATTTCCATTATAAGTTTAAGCTTATTACTGTATTTTATTAGTAAAAAAACTCAAATT
CTTACCCGCTTGAAAGCTCAGATTCTTTCTATTCTACCACTGTTTAAGCAAATCCATTTACAGGCTCGTTTAGTCTTTTT
CTGCTACAATTGTGGATTAATGCTGCAAGCACACTTACGTCTTGACAGCGTACTTGATAGTTTTATCTCAGCCAAAAGCA
ACGATCCTATTTTATCCCCCGAACTTTCTAAAACATTAGCTCGCTTAAAGCAAGGCTATAGGCTCTCTGACTGCTTACCT
GCCCATTTATTTCCAAATGAAGTATTACAAATGATAAAGGTAGGTGAACAAAGTGGGAAACTGGCCGAGATGTTATTACA
AGTGAGTGAAATTTATCGCCAAAAATTAGAATATCAAATTGACTTACTTTCACAAATGCTAGAGCCGCTGTTAATGCTCG
TGATAGGATTCATTGTCGGTACTATTTTAATCGGTTTATATCTACCTATTTTTGATATGGGAGCAATGATTGAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Glaesserella parasuis strain SC1401 |
58.543 |
100 |
0.585 |
| pilC | Haemophilus influenzae Rd KW20 |
43.641 |
100 |
0.44 |
| pilC | Haemophilus influenzae 86-028NP |
42.893 |
100 |
0.432 |