Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | LG374_RS07885 | Genome accession | NZ_OU745373 |
| Coordinates | 1614278..1615975 (-) | Length | 565 a.a. |
| NCBI ID | WP_225757179.1 | Uniprot ID | - |
| Organism | Cardiobacterium sp. Marseille-Q4385 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1609278..1620975
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LG374_RS07865 | - | 1609703..1611205 (+) | 1503 | WP_225757175.1 | helix-hairpin-helix domain-containing protein | - |
| LG374_RS07870 | coaE | 1611554..1612159 (-) | 606 | WP_225757176.1 | dephospho-CoA kinase | - |
| LG374_RS07875 | pilD | 1612165..1613040 (-) | 876 | WP_370639334.1 | A24 family peptidase | Machinery gene |
| LG374_RS07880 | - | 1613043..1614260 (-) | 1218 | WP_225757178.1 | type II secretion system F family protein | - |
| LG374_RS07885 | pilB | 1614278..1615975 (-) | 1698 | WP_225757179.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LG374_RS07890 | - | 1615972..1616574 (-) | 603 | WP_225757180.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| LG374_RS07895 | - | 1616631..1617293 (+) | 663 | WP_225757181.1 | DNA repair protein RecO | - |
| LG374_RS07900 | argG | 1617333..1618670 (-) | 1338 | WP_225757182.1 | argininosuccinate synthase | - |
| LG374_RS07905 | queC | 1618794..1619453 (+) | 660 | WP_225757183.1 | 7-cyano-7-deazaguanine synthase QueC | - |
Sequence
Protein
Download Length: 565 a.a. Molecular weight: 62895.06 Da Isoelectric Point: 5.5627
>NTDB_id=1151537 LG374_RS07885 WP_225757179.1 1614278..1615975(-) (pilB) [Cardiobacterium sp. Marseille-Q4385]
MSDYDPLIGYMVQHKICTPEQIREVQISVQKKRGNFLQQLLSDGLLDGSRLSKINREVYNLPYVMLREMDIRRELTAQFK
EAIVRKHMALPFYAAGGRLFIATFDPSNRMMLDEFKYQGKFTSVEPIIADMGVIEALIEDHYAGVSGMEQIFEDDENQEQ
NINAISEALAGMPGTEEEAPVVRFVSGMLLDAIRTGASDLHFEPYETSYRVRFRRDGVLQEVAAPPPNIANRITARLKVM
ASLDIAEKRVPQDGRIKLQVSETKAIDFRVSSLPTLWGEKIVLRILDSSAAKLNIDVLGFEPDQKQHYLDAISKPQGLVL
VTGPTGSGKTVSLYTGLSILNKPTVNISTAEDPVEINLPGINQVNVNPKTGLDFAAALKAFLRQDPDIIMVGEIRDIVTG
EIAVKAAQTGHLVLSTLHTNDVPQTIARLVNIGIPSYNIAASVNLIMAQRLTRRLCGNCKIRDRRHSHDELVALGFAEDE
IDDLRIYAPKGCERCSYQGYRGRAGIYQVVPISESLSEMILHNASAADIAEQCQKEGYWDLRQSALNKVRQGLTSIEEIL
RVTTD
MSDYDPLIGYMVQHKICTPEQIREVQISVQKKRGNFLQQLLSDGLLDGSRLSKINREVYNLPYVMLREMDIRRELTAQFK
EAIVRKHMALPFYAAGGRLFIATFDPSNRMMLDEFKYQGKFTSVEPIIADMGVIEALIEDHYAGVSGMEQIFEDDENQEQ
NINAISEALAGMPGTEEEAPVVRFVSGMLLDAIRTGASDLHFEPYETSYRVRFRRDGVLQEVAAPPPNIANRITARLKVM
ASLDIAEKRVPQDGRIKLQVSETKAIDFRVSSLPTLWGEKIVLRILDSSAAKLNIDVLGFEPDQKQHYLDAISKPQGLVL
VTGPTGSGKTVSLYTGLSILNKPTVNISTAEDPVEINLPGINQVNVNPKTGLDFAAALKAFLRQDPDIIMVGEIRDIVTG
EIAVKAAQTGHLVLSTLHTNDVPQTIARLVNIGIPSYNIAASVNLIMAQRLTRRLCGNCKIRDRRHSHDELVALGFAEDE
IDDLRIYAPKGCERCSYQGYRGRAGIYQVVPISESLSEMILHNASAADIAEQCQKEGYWDLRQSALNKVRQGLTSIEEIL
RVTTD
Nucleotide
Download Length: 1698 bp
>NTDB_id=1151537 LG374_RS07885 WP_225757179.1 1614278..1615975(-) (pilB) [Cardiobacterium sp. Marseille-Q4385]
ATGAGCGATTATGATCCCTTAATTGGTTATATGGTGCAGCATAAAATCTGTACCCCCGAACAAATCAGGGAAGTGCAGAT
TAGCGTACAGAAAAAACGTGGCAATTTTCTTCAACAATTACTTAGCGATGGATTGCTAGATGGCTCTCGGTTATCAAAGA
TAAATCGGGAAGTCTATAATCTTCCATATGTCATGTTGCGGGAAATGGATATTCGCCGGGAATTGACAGCACAATTCAAA
GAAGCCATTGTCCGCAAACATATGGCTCTGCCGTTTTACGCGGCAGGTGGTCGCCTGTTTATTGCTACTTTTGATCCATC
CAATCGCATGATGCTGGATGAATTCAAATATCAAGGGAAATTCACTTCCGTAGAGCCCATTATTGCCGATATGGGTGTAA
TCGAAGCGCTCATCGAGGATCACTATGCCGGCGTAAGCGGCATGGAACAAATCTTTGAGGATGACGAAAACCAAGAACAA
AATATCAATGCTATCAGCGAAGCGCTCGCTGGCATGCCTGGAACGGAAGAAGAAGCGCCTGTTGTTCGCTTTGTATCCGG
TATGCTGCTTGATGCTATCCGTACGGGTGCCTCGGACTTGCATTTCGAACCCTATGAAACCAGCTATCGGGTACGTTTCC
GTCGGGATGGTGTTTTGCAGGAAGTTGCCGCGCCACCGCCCAATATCGCCAACCGGATTACTGCTCGTCTGAAAGTTATG
GCCAGCTTAGACATCGCCGAAAAACGCGTGCCGCAAGATGGCCGGATAAAATTGCAAGTTTCCGAAACCAAGGCTATAGA
CTTTCGGGTCAGTTCACTGCCTACGCTGTGGGGCGAAAAAATTGTATTGCGTATTTTGGATAGCTCGGCTGCAAAACTAA
ATATAGATGTTTTGGGCTTCGAGCCGGATCAAAAACAGCATTATCTAGACGCTATCAGTAAGCCTCAAGGATTGGTGCTG
GTTACCGGTCCGACGGGTTCCGGTAAAACCGTATCCCTTTATACAGGGCTGTCTATCCTGAATAAACCAACCGTCAATAT
CTCCACTGCGGAAGACCCGGTAGAAATCAACTTGCCCGGTATCAATCAGGTCAACGTCAATCCCAAAACAGGACTCGATT
TCGCCGCTGCCCTCAAGGCTTTTCTGCGACAAGACCCCGATATCATTATGGTCGGGGAAATCCGGGATATTGTGACGGGT
GAGATTGCTGTAAAAGCAGCACAAACAGGACACTTGGTGCTTTCCACCCTGCACACCAACGACGTGCCACAAACGATCGC
CCGTCTCGTCAATATCGGCATTCCGTCCTATAACATCGCGGCGAGCGTCAACCTGATCATGGCGCAACGCTTGACTCGCC
GCTTGTGCGGTAACTGCAAAATACGCGATCGTCGGCATAGTCATGACGAACTGGTAGCTTTGGGATTTGCCGAAGATGAA
ATTGATGATTTGCGCATTTACGCCCCCAAAGGCTGCGAGCGCTGCAGCTATCAGGGATATCGCGGACGTGCAGGTATTTA
TCAGGTAGTCCCCATTTCAGAATCACTATCGGAAATGATCCTGCACAATGCATCAGCAGCCGATATCGCCGAACAATGCC
AGAAAGAAGGATACTGGGATTTGCGTCAATCAGCGCTTAACAAGGTACGCCAAGGCCTCACCAGTATTGAAGAAATTTTA
CGCGTCACCACAGACTAA
ATGAGCGATTATGATCCCTTAATTGGTTATATGGTGCAGCATAAAATCTGTACCCCCGAACAAATCAGGGAAGTGCAGAT
TAGCGTACAGAAAAAACGTGGCAATTTTCTTCAACAATTACTTAGCGATGGATTGCTAGATGGCTCTCGGTTATCAAAGA
TAAATCGGGAAGTCTATAATCTTCCATATGTCATGTTGCGGGAAATGGATATTCGCCGGGAATTGACAGCACAATTCAAA
GAAGCCATTGTCCGCAAACATATGGCTCTGCCGTTTTACGCGGCAGGTGGTCGCCTGTTTATTGCTACTTTTGATCCATC
CAATCGCATGATGCTGGATGAATTCAAATATCAAGGGAAATTCACTTCCGTAGAGCCCATTATTGCCGATATGGGTGTAA
TCGAAGCGCTCATCGAGGATCACTATGCCGGCGTAAGCGGCATGGAACAAATCTTTGAGGATGACGAAAACCAAGAACAA
AATATCAATGCTATCAGCGAAGCGCTCGCTGGCATGCCTGGAACGGAAGAAGAAGCGCCTGTTGTTCGCTTTGTATCCGG
TATGCTGCTTGATGCTATCCGTACGGGTGCCTCGGACTTGCATTTCGAACCCTATGAAACCAGCTATCGGGTACGTTTCC
GTCGGGATGGTGTTTTGCAGGAAGTTGCCGCGCCACCGCCCAATATCGCCAACCGGATTACTGCTCGTCTGAAAGTTATG
GCCAGCTTAGACATCGCCGAAAAACGCGTGCCGCAAGATGGCCGGATAAAATTGCAAGTTTCCGAAACCAAGGCTATAGA
CTTTCGGGTCAGTTCACTGCCTACGCTGTGGGGCGAAAAAATTGTATTGCGTATTTTGGATAGCTCGGCTGCAAAACTAA
ATATAGATGTTTTGGGCTTCGAGCCGGATCAAAAACAGCATTATCTAGACGCTATCAGTAAGCCTCAAGGATTGGTGCTG
GTTACCGGTCCGACGGGTTCCGGTAAAACCGTATCCCTTTATACAGGGCTGTCTATCCTGAATAAACCAACCGTCAATAT
CTCCACTGCGGAAGACCCGGTAGAAATCAACTTGCCCGGTATCAATCAGGTCAACGTCAATCCCAAAACAGGACTCGATT
TCGCCGCTGCCCTCAAGGCTTTTCTGCGACAAGACCCCGATATCATTATGGTCGGGGAAATCCGGGATATTGTGACGGGT
GAGATTGCTGTAAAAGCAGCACAAACAGGACACTTGGTGCTTTCCACCCTGCACACCAACGACGTGCCACAAACGATCGC
CCGTCTCGTCAATATCGGCATTCCGTCCTATAACATCGCGGCGAGCGTCAACCTGATCATGGCGCAACGCTTGACTCGCC
GCTTGTGCGGTAACTGCAAAATACGCGATCGTCGGCATAGTCATGACGAACTGGTAGCTTTGGGATTTGCCGAAGATGAA
ATTGATGATTTGCGCATTTACGCCCCCAAAGGCTGCGAGCGCTGCAGCTATCAGGGATATCGCGGACGTGCAGGTATTTA
TCAGGTAGTCCCCATTTCAGAATCACTATCGGAAATGATCCTGCACAATGCATCAGCAGCCGATATCGCCGAACAATGCC
AGAAAGAAGGATACTGGGATTTGCGTCAATCAGCGCTTAACAAGGTACGCCAAGGCCTCACCAGTATTGAAGAAATTTTA
CGCGTCACCACAGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
49.823 |
99.823 |
0.497 |
| pilF | Neisseria gonorrhoeae MS11 |
47.695 |
99.823 |
0.476 |
| pilB | Legionella pneumophila strain ERS1305867 |
46.679 |
98.584 |
0.46 |
| pilB | Acinetobacter baylyi ADP1 |
51.807 |
88.142 |
0.457 |
| pilB | Vibrio cholerae strain A1552 |
45.893 |
99.115 |
0.455 |
| pilB | Vibrio campbellii strain DS40M4 |
47.222 |
95.575 |
0.451 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
47.628 |
93.274 |
0.444 |
| pilF | Thermus thermophilus HB27 |
37.434 |
100 |
0.377 |
| pilB | Haemophilus influenzae 86-028NP |
38.563 |
93.628 |
0.361 |