Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LG374_RS07875 Genome accession   NZ_OU745373
Coordinates   1612165..1613040 (-) Length   291 a.a.
NCBI ID   WP_370639334.1    Uniprot ID   -
Organism   Cardiobacterium sp. Marseille-Q4385     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1607165..1618040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG374_RS07860 - 1608150..1609706 (+) 1557 WP_225757174.1 protein phosphatase 2C domain-containing protein -
  LG374_RS07865 - 1609703..1611205 (+) 1503 WP_225757175.1 helix-hairpin-helix domain-containing protein -
  LG374_RS07870 coaE 1611554..1612159 (-) 606 WP_225757176.1 dephospho-CoA kinase -
  LG374_RS07875 pilD 1612165..1613040 (-) 876 WP_370639334.1 A24 family peptidase Machinery gene
  LG374_RS07880 - 1613043..1614260 (-) 1218 WP_225757178.1 type II secretion system F family protein -
  LG374_RS07885 pilB 1614278..1615975 (-) 1698 WP_225757179.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LG374_RS07890 - 1615972..1616574 (-) 603 WP_225757180.1 aminodeoxychorismate/anthranilate synthase component II -
  LG374_RS07895 - 1616631..1617293 (+) 663 WP_225757181.1 DNA repair protein RecO -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32475.92 Da        Isoelectric Point: 7.5990

>NTDB_id=1151536 LG374_RS07875 WP_370639334.1 1612165..1613040(-) (pilD) [Cardiobacterium sp. Marseille-Q4385]
MSLDAVFFQTPFGIVLIGVWGLMVGSFLNVVIYRLPVMMEREEKMYAWEILHGETEGGDNNPFKTTETFNLMFPGSHCPN
CGTHIRFWQNIPIVSYLLQRGRCVGCGTKISIRYLLVELLCGVLSILVVLRYPDPWQLIFALLLTWALLAMIFIDAEKQL
LPDVITLPFMWLGIIAACIHGGLFVSLHTSVIGAIVGYLSLWSVYWVFRLITGKEGMGYGDFKLLALLCAWQGIAMLPFI
LFFSAVTGLIFAIINRIGRSIPMAFGPYLAIAGWLTFMYGGRIAALTGLSL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1151536 LG374_RS07875 WP_370639334.1 1612165..1613040(-) (pilD) [Cardiobacterium sp. Marseille-Q4385]
ATGTCTTTAGACGCCGTTTTTTTCCAAACGCCTTTCGGCATTGTGCTGATTGGCGTTTGGGGTTTGATGGTGGGGAGTTT
TCTCAACGTCGTTATCTATCGCCTGCCCGTCATGATGGAGCGCGAAGAGAAAATGTACGCTTGGGAGATCCTGCATGGTG
AAACGGAAGGTGGAGACAATAATCCTTTCAAAACAACGGAAACCTTCAATCTGATGTTTCCGGGGTCGCATTGTCCAAAT
TGCGGTACCCACATTCGTTTCTGGCAGAATATTCCTATCGTGAGTTATCTCTTGCAACGCGGTCGCTGTGTCGGCTGTGG
CACAAAGATATCTATCCGTTATTTATTGGTGGAATTACTGTGCGGCGTGCTGAGTATTCTGGTTGTGCTGCGTTACCCCG
ATCCATGGCAACTAATTTTTGCCCTGCTGTTGACATGGGCACTGCTTGCCATGATTTTCATTGATGCAGAAAAACAGCTG
TTGCCTGATGTGATAACCCTGCCGTTTATGTGGCTTGGTATTATCGCAGCCTGCATTCATGGTGGTCTCTTTGTCAGTTT
GCATACCAGTGTGATTGGAGCCATTGTCGGCTATCTTTCATTGTGGTCGGTATATTGGGTATTCCGCCTGATAACTGGTA
AGGAAGGAATGGGCTATGGTGATTTCAAACTGCTGGCGCTGCTTTGTGCCTGGCAGGGGATTGCCATGCTGCCGTTTATT
CTGTTCTTCTCGGCAGTGACCGGGCTTATCTTCGCCATTATTAATCGTATTGGCCGTAGTATTCCGATGGCCTTTGGTCC
TTATCTGGCCATCGCCGGCTGGCTTACTTTCATGTATGGCGGACGAATCGCAGCGCTAACCGGCCTGTCCCTCTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-131)

Type IV leader peptidase family (Peptidase_A24)

(143-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

51.449

94.845

0.488
  pilD Vibrio cholerae strain A1552

47.253

93.814

0.443
  pilD Vibrio campbellii strain DS40M4

47.08

94.158

0.443
  pilD Acinetobacter baumannii D1279779

45.66

91.065

0.416
  pilD Acinetobacter nosocomialis M2

44.649

93.127

0.416

Multiple sequence alignment