Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   W903_RS01130 Genome accession   NZ_CP006910
Coordinates   191527..191940 (+) Length   137 a.a.
NCBI ID   WP_000244259.1    Uniprot ID   -
Organism   Streptococcus agalactiae CNCTC 10/84     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 186527..196940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  W903_RS01110 (W903_0226) - 188781..189146 (+) 366 WP_000285373.1 DUF1033 family protein -
  W903_RS01115 (W903_0227) comYA 189318..190289 (+) 972 WP_000250801.1 competence type IV pilus ATPase ComGA Machinery gene
  W903_RS01120 (W903_0228) comYB 190183..191226 (+) 1044 WP_228313184.1 competence type IV pilus assembly protein ComGB Machinery gene
  W903_RS01125 (W903_0229) comGC/cglC 191223..191552 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  W903_RS01130 (W903_0230) comYD 191527..191940 (+) 414 WP_000244259.1 competence type IV pilus minor pilin ComGD Machinery gene
  W903_RS01135 (W903_0231) comGE 191912..192211 (+) 300 WP_038406052.1 competence type IV pilus minor pilin ComGE -
  W903_RS01140 (W903_0232) comGF 192165..192626 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF -
  W903_RS01145 (W903_0233) comGG 192604..192975 (+) 372 WP_000601105.1 competence type IV pilus minor pilin ComGG -
  W903_RS01150 (W903_0234) comYH 193090..194064 (+) 975 WP_001008567.1 class I SAM-dependent methyltransferase Machinery gene
  W903_RS01155 (W903_0235) - 194096..195289 (+) 1194 WP_000047534.1 acetate kinase -
  W903_RS01160 (W903_0236) - 195417..195609 (+) 193 Protein_173 helix-turn-helix transcriptional regulator -
  W903_RS10230 (W903_0237) - 195588..195854 (+) 267 Protein_174 hypothetical protein -
  W903_RS01165 (W903_0238) - 195923..196588 (+) 666 WP_000008107.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15938.41 Da        Isoelectric Point: 9.9787

>NTDB_id=114929 W903_RS01130 WP_000244259.1 191527..191940(+) (comYD) [Streptococcus agalactiae CNCTC 10/84]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide


Download         Length: 414 bp        

>NTDB_id=114929 W903_RS01130 WP_000244259.1 191527..191940(+) (comYD) [Streptococcus agalactiae CNCTC 10/84]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACGCTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAACTATCGTA
AGAAAGAAAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus mutans UA140

51.515

96.35

0.496
  comYD Streptococcus mutans UA159

51.515

96.35

0.496
  comYD Streptococcus gordonii str. Challis substr. CH1

47.407

98.54

0.467
  comGD/cglD Streptococcus mitis NCTC 12261

41.045

97.81

0.401
  comGD/cglD Streptococcus pneumoniae TIGR4

43.307

92.701

0.401
  comGD/cglD Streptococcus mitis SK321

43.307

92.701

0.401
  comGD/cglD Streptococcus pneumoniae Rx1

42.52

92.701

0.394
  comGD/cglD Streptococcus pneumoniae D39

42.52

92.701

0.394
  comGD/cglD Streptococcus pneumoniae R6

42.52

92.701

0.394

Multiple sequence alignment