Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   DG022_RS06085 Genome accession   NZ_LT963436
Coordinates   1231912..1232223 (+) Length   103 a.a.
NCBI ID   WP_011303023.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1226912..1237223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG022_RS06055 - 1227650..1227847 (+) 198 WP_037538382.1 YqgQ family protein -
  DG022_RS06060 - 1227851..1228837 (+) 987 WP_078073040.1 glucokinase -
  DG022_RS06065 - 1228837..1229163 (+) 327 WP_002483185.1 MTH1187 family thiamine-binding protein -
  DG022_RS06070 - 1229163..1229786 (+) 624 WP_011303020.1 MBL fold metallo-hydrolase -
  DG022_RS06075 comGA 1229874..1230848 (+) 975 WP_078073039.1 competence type IV pilus ATPase ComGA Machinery gene
  DG022_RS06080 comGB 1230820..1231884 (+) 1065 WP_169932313.1 competence type IV pilus assembly protein ComGB -
  DG022_RS06085 comGC 1231912..1232223 (+) 312 WP_011303023.1 competence type IV pilus major pilin ComGC Machinery gene
  DG022_RS06090 comGD 1232204..1232659 (+) 456 WP_231912205.1 competence type IV pilus minor pilin ComGD -
  DG022_RS06100 comGF 1232917..1233360 (+) 444 WP_078073037.1 competence type IV pilus minor pilin ComGF -
  DG022_RS06110 - 1233564..1234037 (+) 474 WP_078073063.1 shikimate kinase -
  DG022_RS06115 gcvT 1234221..1235312 (+) 1092 WP_069820160.1 glycine cleavage system aminomethyltransferase GcvT -
  DG022_RS06120 gcvPA 1235330..1236682 (+) 1353 WP_078073036.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11372.45 Da        Isoelectric Point: 9.1187

>NTDB_id=1148911 DG022_RS06085 WP_011303023.1 1231912..1232223(+) (comGC) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
MKKLKINRNAFTLIEMLLVLLIISLLLILIIPNIAKQSSHLQNTGCEAQLKMIDSQIEAYALKFNKKPSSIEDLVTEGYI
KENQKSCKSGAAITINNGEAVAN

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1148911 DG022_RS06085 WP_011303023.1 1231912..1232223(+) (comGC) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
ATGAAAAAACTAAAAATTAATAGAAATGCTTTTACATTAATAGAAATGTTACTTGTATTATTAATAATTAGCTTATTATT
AATATTAATTATACCCAATATAGCTAAACAATCGTCTCATTTGCAAAATACTGGATGTGAGGCACAACTTAAAATGATTG
ATAGCCAAATTGAAGCGTATGCTTTAAAGTTTAATAAAAAGCCATCGTCTATAGAAGACTTAGTTACAGAAGGATACATT
AAAGAAAATCAAAAGTCATGTAAATCTGGTGCAGCCATCACTATTAACAATGGTGAAGCTGTTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

78.723

91.262

0.718
  comGC Staphylococcus aureus MW2

78.723

91.262

0.718
  comYC Streptococcus gordonii str. Challis substr. CH1

42.857

100

0.437
  comYC Streptococcus mutans UA159

48.837

83.495

0.408
  comYC Streptococcus mutans UA140

48.837

83.495

0.408
  comGC/cglC Streptococcus mitis NCTC 12261

39.806

100

0.398
  comGC Bacillus subtilis subsp. subtilis str. 168

41.489

91.262

0.379
  comYC Streptococcus suis isolate S10

44.706

82.524

0.369
  comGC/cglC Streptococcus mitis SK321

45.238

81.553

0.369

Multiple sequence alignment