Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | DG022_RS06075 | Genome accession | NZ_LT963436 |
| Coordinates | 1229874..1230848 (+) | Length | 324 a.a. |
| NCBI ID | WP_078073039.1 | Uniprot ID | - |
| Organism | Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1224874..1235848
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DG022_RS06040 | rpmG | 1225294..1225443 (+) | 150 | WP_002483181.1 | 50S ribosomal protein L33 | - |
| DG022_RS06045 | - | 1225652..1226197 (+) | 546 | WP_078073042.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| DG022_RS06050 | - | 1226209..1227666 (+) | 1458 | WP_078073041.1 | rhomboid family intramembrane serine protease | - |
| DG022_RS06055 | - | 1227650..1227847 (+) | 198 | WP_037538382.1 | YqgQ family protein | - |
| DG022_RS06060 | - | 1227851..1228837 (+) | 987 | WP_078073040.1 | glucokinase | - |
| DG022_RS06065 | - | 1228837..1229163 (+) | 327 | WP_002483185.1 | MTH1187 family thiamine-binding protein | - |
| DG022_RS06070 | - | 1229163..1229786 (+) | 624 | WP_011303020.1 | MBL fold metallo-hydrolase | - |
| DG022_RS06075 | comGA | 1229874..1230848 (+) | 975 | WP_078073039.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DG022_RS06080 | comGB | 1230820..1231884 (+) | 1065 | WP_169932313.1 | competence type IV pilus assembly protein ComGB | - |
| DG022_RS06085 | comGC | 1231912..1232223 (+) | 312 | WP_011303023.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DG022_RS06090 | comGD | 1232204..1232659 (+) | 456 | WP_231912205.1 | competence type IV pilus minor pilin ComGD | - |
| DG022_RS06100 | comGF | 1232917..1233360 (+) | 444 | WP_078073037.1 | competence type IV pilus minor pilin ComGF | - |
| DG022_RS06110 | - | 1233564..1234037 (+) | 474 | WP_078073063.1 | shikimate kinase | - |
| DG022_RS06115 | gcvT | 1234221..1235312 (+) | 1092 | WP_069820160.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36664.88 Da Isoelectric Point: 9.6143
>NTDB_id=1148910 DG022_RS06075 WP_078073039.1 1229874..1230848(+) (comGA) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
MKLLFNNILKKAISTKATDVHFIPSNDKIYIKFRVQDTLAPIESIQQHIYLKLLTYMKYQAGLDVSKHNVAQSGRYTYKF
KQIYFLRISTLPLSLGIESCVIRIVPQYFQKGSDTSNLGTLYKLMNKKQGLILLSGPTGSGKSTLMYQMVMHAKEQLDLN
IITVEDPVEQLVSGITQVSINEKAGINYENTFKAILRCDPDIILIGEIRDAIIAKQVMHASLSGHLVLTTIHANNCKGAL
LRLKEMGLTMQEMKQALLTVLNQRLITTYNNQRKLVYEQLTKAQINHLIDNDYTLPSSFSNLSTQLTQLAKAGVICEETM
ERYI
MKLLFNNILKKAISTKATDVHFIPSNDKIYIKFRVQDTLAPIESIQQHIYLKLLTYMKYQAGLDVSKHNVAQSGRYTYKF
KQIYFLRISTLPLSLGIESCVIRIVPQYFQKGSDTSNLGTLYKLMNKKQGLILLSGPTGSGKSTLMYQMVMHAKEQLDLN
IITVEDPVEQLVSGITQVSINEKAGINYENTFKAILRCDPDIILIGEIRDAIIAKQVMHASLSGHLVLTTIHANNCKGAL
LRLKEMGLTMQEMKQALLTVLNQRLITTYNNQRKLVYEQLTKAQINHLIDNDYTLPSSFSNLSTQLTQLAKAGVICEETM
ERYI
Nucleotide
Download Length: 975 bp
>NTDB_id=1148910 DG022_RS06075 WP_078073039.1 1229874..1230848(+) (comGA) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
TTGAAACTTTTATTTAATAATATACTTAAAAAAGCGATTAGTACAAAGGCCACTGATGTGCACTTTATTCCTTCAAATGA
CAAAATATATATTAAATTCAGAGTTCAAGATACGCTTGCACCAATTGAATCCATACAGCAACATATTTATTTGAAATTAT
TAACCTATATGAAATATCAAGCTGGTTTAGATGTGTCTAAACATAATGTTGCTCAAAGTGGTAGATATACTTACAAATTC
AAGCAAATTTACTTTTTAAGAATATCCACGCTACCTTTATCTCTGGGAATAGAAAGTTGTGTTATCAGAATTGTTCCACA
GTATTTTCAAAAAGGAAGTGATACAAGTAATTTAGGTACATTATATAAATTAATGAATAAAAAACAGGGGCTTATATTAT
TAAGTGGACCCACTGGTTCCGGAAAAAGCACTTTAATGTATCAAATGGTCATGCATGCAAAAGAGCAGTTAGATTTAAAT
ATCATAACAGTTGAAGATCCAGTGGAGCAGCTAGTATCTGGAATTACACAAGTATCGATTAATGAAAAAGCAGGTATCAA
TTATGAAAATACTTTTAAAGCGATTTTAAGATGTGATCCTGACATTATTTTGATTGGTGAAATTAGAGATGCCATAATAG
CTAAACAAGTAATGCATGCGAGTCTAAGTGGTCATTTAGTATTAACAACAATTCACGCTAATAACTGTAAAGGCGCATTA
TTAAGGCTTAAAGAAATGGGACTAACGATGCAAGAAATGAAACAAGCTTTATTAACCGTTTTAAACCAAAGACTAATTAC
GACTTATAATAATCAAAGAAAACTTGTATATGAACAACTTACTAAAGCACAAATAAATCATTTAATAGACAATGACTATA
CATTACCTAGTTCATTTTCTAATTTGTCTACTCAATTAACTCAATTAGCCAAAGCAGGTGTTATTTGTGAAGAAACTATG
GAGCGCTATATTTAA
TTGAAACTTTTATTTAATAATATACTTAAAAAAGCGATTAGTACAAAGGCCACTGATGTGCACTTTATTCCTTCAAATGA
CAAAATATATATTAAATTCAGAGTTCAAGATACGCTTGCACCAATTGAATCCATACAGCAACATATTTATTTGAAATTAT
TAACCTATATGAAATATCAAGCTGGTTTAGATGTGTCTAAACATAATGTTGCTCAAAGTGGTAGATATACTTACAAATTC
AAGCAAATTTACTTTTTAAGAATATCCACGCTACCTTTATCTCTGGGAATAGAAAGTTGTGTTATCAGAATTGTTCCACA
GTATTTTCAAAAAGGAAGTGATACAAGTAATTTAGGTACATTATATAAATTAATGAATAAAAAACAGGGGCTTATATTAT
TAAGTGGACCCACTGGTTCCGGAAAAAGCACTTTAATGTATCAAATGGTCATGCATGCAAAAGAGCAGTTAGATTTAAAT
ATCATAACAGTTGAAGATCCAGTGGAGCAGCTAGTATCTGGAATTACACAAGTATCGATTAATGAAAAAGCAGGTATCAA
TTATGAAAATACTTTTAAAGCGATTTTAAGATGTGATCCTGACATTATTTTGATTGGTGAAATTAGAGATGCCATAATAG
CTAAACAAGTAATGCATGCGAGTCTAAGTGGTCATTTAGTATTAACAACAATTCACGCTAATAACTGTAAAGGCGCATTA
TTAAGGCTTAAAGAAATGGGACTAACGATGCAAGAAATGAAACAAGCTTTATTAACCGTTTTAAACCAAAGACTAATTAC
GACTTATAATAATCAAAGAAAACTTGTATATGAACAACTTACTAAAGCACAAATAAATCATTTAATAGACAATGACTATA
CATTACCTAGTTCATTTTCTAATTTGTCTACTCAATTAACTCAATTAGCCAAAGCAGGTGTTATTTGTGAAGAAACTATG
GAGCGCTATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
62.037 |
100 |
0.62 |
| comGA | Staphylococcus aureus N315 |
62.037 |
100 |
0.62 |