Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | CKV64_RS05960 | Genome accession | NZ_LT906462 |
| Coordinates | 1187178..1187495 (+) | Length | 105 a.a. |
| NCBI ID | WP_095087821.1 | Uniprot ID | A0A239Z6P3 |
| Organism | Mammaliicoccus stepanovicii strain NCTC13839 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1182178..1192495
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKV64_RS05920 (SAMEA4384403_01223) | - | 1182322..1182513 (+) | 192 | WP_095087806.1 | YqgQ family protein | - |
| CKV64_RS05925 (SAMEA4384403_01224) | - | 1182510..1183481 (+) | 972 | WP_095087808.1 | ROK family glucokinase | - |
| CKV64_RS05930 (SAMEA4384403_01225) | - | 1183481..1183813 (+) | 333 | WP_095087810.1 | MTH1187 family thiamine-binding protein | - |
| CKV64_RS05935 (SAMEA4384403_01226) | - | 1183827..1184066 (-) | 240 | WP_095087812.1 | DUF2759 domain-containing protein | - |
| CKV64_RS05940 (SAMEA4384403_01227) | - | 1184164..1184796 (+) | 633 | WP_095087814.1 | MBL fold metallo-hydrolase | - |
| CKV64_RS05945 (SAMEA4384403_01228) | - | 1184832..1185080 (-) | 249 | WP_095087817.1 | DUF2626 family protein | - |
| CKV64_RS05950 (SAMEA4384403_01229) | comGA | 1185232..1186134 (+) | 903 | WP_095087820.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CKV64_RS05955 (SAMEA4384403_01230) | comGB | 1186091..1187164 (+) | 1074 | WP_229726474.1 | competence type IV pilus assembly protein ComGB | - |
| CKV64_RS05960 (SAMEA4384403_01231) | comGC | 1187178..1187495 (+) | 318 | WP_095087821.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CKV64_RS05965 (SAMEA4384403_01232) | comGD | 1187495..1187923 (+) | 429 | WP_095090113.1 | competence type IV pilus minor pilin ComGD | - |
| CKV64_RS05970 (SAMEA4384403_01233) | comGE | 1187907..1188188 (+) | 282 | WP_095087823.1 | competence type IV pilus minor pilin ComGE | - |
| CKV64_RS05975 (SAMEA4384403_01234) | comGF | 1188163..1188597 (+) | 435 | WP_095087825.1 | competence type IV pilus minor pilin ComGF | - |
| CKV64_RS05980 (SAMEA4384403_01236) | - | 1188831..1189319 (+) | 489 | WP_095087827.1 | shikimate kinase | - |
| CKV64_RS05985 (SAMEA4384403_01238) | gcvT | 1189511..1190596 (+) | 1086 | WP_095087829.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| CKV64_RS05990 (SAMEA4384403_01239) | gcvPA | 1190611..1191954 (+) | 1344 | WP_095087831.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11669.68 Da Isoelectric Point: 8.5012
>NTDB_id=1147688 CKV64_RS05960 WP_095087821.1 1187178..1187495(+) (comGC) [Mammaliicoccus stepanovicii strain NCTC13839]
MFLFKKLKKNEGFTLIEMLIVLLIISILLIVIIPNISKQSENVKSTGCKAQVKMVAGQVEAYTLKHDTRPSSVEDLVNEG
YVNQNQLTCKSGERITIQNGEVTSS
MFLFKKLKKNEGFTLIEMLIVLLIISILLIVIIPNISKQSENVKSTGCKAQVKMVAGQVEAYTLKHDTRPSSVEDLVNEG
YVNQNQLTCKSGERITIQNGEVTSS
Nucleotide
Download Length: 318 bp
>NTDB_id=1147688 CKV64_RS05960 WP_095087821.1 1187178..1187495(+) (comGC) [Mammaliicoccus stepanovicii strain NCTC13839]
ATGTTTTTATTTAAAAAATTAAAGAAAAATGAAGGATTCACACTCATAGAAATGTTGATCGTACTTCTTATCATTAGTAT
TCTGCTTATCGTCATTATTCCAAATATAAGTAAACAATCTGAGAATGTTAAGAGTACGGGATGTAAAGCACAGGTGAAGA
TGGTTGCTGGTCAAGTTGAAGCATATACATTAAAGCATGACACAAGACCAAGTTCTGTTGAAGATTTGGTTAATGAGGGT
TATGTTAACCAGAACCAATTAACTTGTAAATCAGGAGAAAGAATTACCATTCAAAATGGTGAAGTCACATCTAGTTGA
ATGTTTTTATTTAAAAAATTAAAGAAAAATGAAGGATTCACACTCATAGAAATGTTGATCGTACTTCTTATCATTAGTAT
TCTGCTTATCGTCATTATTCCAAATATAAGTAAACAATCTGAGAATGTTAAGAGTACGGGATGTAAAGCACAGGTGAAGA
TGGTTGCTGGTCAAGTTGAAGCATATACATTAAAGCATGACACAAGACCAAGTTCTGTTGAAGATTTGGTTAATGAGGGT
TATGTTAACCAGAACCAATTAACTTGTAAATCAGGAGAAAGAATTACCATTCAAAATGGTGAAGTCACATCTAGTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus N315 |
63.107 |
98.095 |
0.619 |
| comGC | Staphylococcus aureus MW2 |
63.107 |
98.095 |
0.619 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
46.739 |
87.619 |
0.41 |
| comGC/cglC | Streptococcus mitis SK321 |
40 |
95.238 |
0.381 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
39 |
95.238 |
0.371 |
| comGC/cglC | Streptococcus pneumoniae D39 |
39 |
95.238 |
0.371 |
| comGC/cglC | Streptococcus pneumoniae R6 |
39 |
95.238 |
0.371 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
39 |
95.238 |
0.371 |
| comYC | Streptococcus mutans UA140 |
50.667 |
71.429 |
0.362 |
| comYC | Streptococcus mutans UA159 |
50.667 |
71.429 |
0.362 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
45.783 |
79.048 |
0.362 |