Detailed information NTG1147103

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: CKW02_RS16960
• Genome accession: NZ_LT906438
• Coordinates: 3232450..3233046 (+)
• Length: 198 a.a.
• NCBI ID: WP_003212962.1
• Uniprot ID: A0A081LFM4
• Organism: Bacillus pumilus strain NCTC10337
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3227450..3238046

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKW02_RS16935 (SAMEA4076707_03459)	abc-f	3227474..3229033 (-)	1560	WP_003212762.1	ribosomal protection-like ABC-F family protein	-
CKW02_RS16940 (SAMEA4076707_03460)	-	3229525..3230694 (-)	1170	WP_003213609.1	macrolide family glycosyltransferase	-
CKW02_RS16945 (SAMEA4076707_03461)	-	3230956..3231420 (-)	465	WP_003212622.1	DinB family protein	-
CKW02_RS16955 (SAMEA4076707_03463)	-	3231916..3232221 (-)	306	WP_034620141.1	TM2 domain-containing protein	-
CKW02_RS16960 (SAMEA4076707_03464)	clpP	3232450..3233046 (+)	597	WP_003212962.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
CKW02_RS16965 (SAMEA4076707_03465)	-	3233106..3233684 (-)	579	WP_034620142.1	TIGR00730 family Rossman fold protein	-
CKW02_RS16970 (SAMEA4076707_03466)	-	3233821..3234150 (+)	330	WP_003213115.1	MazG nucleotide pyrophosphohydrolase domain-containing protein	-
CKW02_RS16975 (SAMEA4076707_03467)	-	3234179..3235801 (-)	1623	WP_003213243.1	SulP family inorganic anion transporter	-
CKW02_RS16980 (SAMEA4076707_03468)	-	3235839..3236420 (-)	582	WP_003213318.1	beta-class carbonic anhydrase	-
CKW02_RS16985 (SAMEA4076707_03469)	-	3236974..3237951 (+)	978	WP_003213741.1	2-hydroxyacid dehydrogenase	-

Sequence

Protein

• Length: 198 a.a.
• Molecular weight: 21816.00 Da
• Isoelectric Point: 4.6905

>NTDB_id=1147103 CKW02_RS16960 WP_003212962.1 3232450..3233046(+) (clpP) [Bacillus pumilus strain NCTC10337]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNAEEQK

Nucleotide

• Length: 597 bp

>NTDB_id=1147103 CKW02_RS16960 WP_003212962.1 3232450..3233046(+) (clpP) [Bacillus pumilus strain NCTC10337]
ATGAATTTAATACCTACAGTCATTGAACAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCCCAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCAATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACCATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCTCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGTGGTGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGCACTGGTCAG
CCAATCGAAGTGATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATGCAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (13-192)

3D structure

• AlphaFold DB: A0A081LFM4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	92.386	99.495	0.919
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.539	96.465	0.652
clpP	Streptococcus thermophilus LMG 18311	58.549	97.475	0.571
clpP	Streptococcus thermophilus LMD-9	58.549	97.475	0.571
clpP	Lactococcus lactis subsp. cremoris KW2	56.186	97.98	0.551
clpP	Streptococcus pneumoniae Rx1	55.67	97.98	0.545
clpP	Streptococcus pneumoniae D39	55.67	97.98	0.545
clpP	Streptococcus pneumoniae R6	55.67	97.98	0.545
clpP	Streptococcus pneumoniae TIGR4	55.67	97.98	0.545
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Streptococcus mutans UA159	54.639	97.98	0.535
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.124	97.98	0.53