Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BUC38_RS05675 Genome accession   NZ_LT671674
Coordinates   1147251..1148093 (+) Length   280 a.a.
NCBI ID   WP_044689882.1    Uniprot ID   -
Organism   Streptococcus suis strain LS9N     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1142251..1153093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS05645 - 1142378..1143387 (+) 1010 Protein_1059 YdcF family protein -
  BUC38_RS05650 - 1143396..1144712 (+) 1317 WP_029180295.1 glucosyltransferase domain-containing protein -
  BUC38_RS05655 - 1144906..1145556 (-) 651 WP_029189077.1 hemolysin III family protein -
  BUC38_RS05660 - 1145546..1146097 (-) 552 WP_004195688.1 DUF1836 domain-containing protein -
  BUC38_RS05665 - 1146194..1146505 (-) 312 WP_044689883.1 rhodanese-like domain-containing protein -
  BUC38_RS05670 - 1146635..1147192 (+) 558 WP_029180298.1 sugar O-acetyltransferase -
  BUC38_RS05675 dprA 1147251..1148093 (+) 843 WP_044689882.1 DNA-processing protein DprA Machinery gene
  BUC38_RS05680 topA 1148186..1150279 (+) 2094 WP_044689880.1 type I DNA topoisomerase -
  BUC38_RS05685 rplJ 1150844..1151338 (+) 495 WP_002936486.1 50S ribosomal protein L10 -
  BUC38_RS05690 rplL 1151404..1151769 (+) 366 WP_002936483.1 50S ribosomal protein L7/L12 -
  BUC38_RS05695 - 1151968..1152141 (+) 174 WP_044689879.1 hypothetical protein -
  BUC38_RS05700 - 1152138..1152956 (+) 819 WP_044689878.1 replication initiator protein A -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31296.21 Da        Isoelectric Point: 8.2256

>NTDB_id=1146001 BUC38_RS05675 WP_044689882.1 1147251..1148093(+) (dprA) [Streptococcus suis strain LS9N]
MNNFELFKWKKAGLTNLNINKVLAYQDLHGKKLTLRNIAVVSECKNPVLFMENYKNLDIKACREEFNKFPSFSILDDVYP
LALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGVQSVQKIIKELNNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDNIYPKENRELQTYIGKHHLVLTEYEPGAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIMDGKSDGCHHLIQEGAKCITSGLDIISEYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=1146001 BUC38_RS05675 WP_044689882.1 1147251..1148093(+) (dprA) [Streptococcus suis strain LS9N]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGTTTGACCAATCTTAATATTAATAAAGTTTTGGCCTATCAAGA
TTTACATGGTAAAAAATTGACCTTGCGCAATATCGCTGTCGTATCCGAATGTAAAAATCCAGTGTTATTTATGGAAAACT
ATAAGAATTTGGATATCAAAGCCTGTCGGGAAGAATTTAACAAGTTTCCTTCTTTTTCGATTTTGGATGACGTCTATCCA
CTAGCATTGAAGCAAATTTACAATCCACCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTGGAAAAATCAAAGCT
GGCAGTTGTTGGTACACGAAATGCCAGTAAAAATGGCGTTCAGTCTGTTCAGAAGATTATCAAAGAACTCAACAATCGCT
TTGTCATTGTCAGTGGTTTGGCAAGAGGAATTGATACAGCAGCCCACATCGCCAGTTTGAAAAATGGAGGCCAAACCATT
GCTGTAATTGGAACAGGTTTAGATAATATTTATCCAAAAGAAAACAGAGAATTACAGACCTACATCGGAAAACACCATTT
AGTTTTGACTGAATATGAACCAGGTGCTCAGCCTCTCAAATACCATTTTCCAGAACGCAATCGCATTATAGCTGGTTTGG
TGGAAGGATTGGTAGTCTGCGAGGCAAAAATGCGGTCTGGCAGCTTGATTACTTGTGAACGTGCCTTGGAAGAAGGCAGA
GAAGTCTATGCTATTCCAGGTTCCATTATGGATGGGAAATCAGATGGTTGTCATCATCTGATTCAAGAGGGAGCAAAGTG
CATTACATCAGGCTTGGACATCATTTCTGAGTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

70.714

100

0.707
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.929

100

0.639
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.929

100

0.639
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.929

100

0.639
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.929

100

0.639
  dprA/cilB/dalA Streptococcus mitis SK321

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.214

100

0.632
  dprA Lactococcus lactis subsp. cremoris KW2

59.643

100

0.596
  dprA Bacillus subtilis subsp. subtilis str. 168

49.55

79.286

0.393
  dprA Vibrio campbellii strain DS40M4

36.519

100

0.382
  dprA Legionella pneumophila strain ERS1305867

41.296

88.214

0.364
  dprA Latilactobacillus sakei subsp. sakei 23K

40.964

88.929

0.364

Multiple sequence alignment