Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   BUC38_RS03700 Genome accession   NZ_LT671674
Coordinates   731632..732243 (+) Length   203 a.a.
NCBI ID   WP_223375679.1    Uniprot ID   -
Organism   Streptococcus suis strain LS9N     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 726632..737243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS03680 - 726788..727618 (+) 831 WP_009910491.1 carbohydrate ABC transporter permease -
  BUC38_RS03685 gtfA 727687..729135 (+) 1449 WP_012027490.1 sucrose phosphorylase -
  BUC38_RS03690 - 729208..730824 (+) 1617 WP_044689329.1 alpha-glucosidase -
  BUC38_RS03695 upp 730907..731536 (+) 630 WP_002937309.1 uracil phosphoribosyltransferase -
  BUC38_RS03700 clpP 731632..732243 (+) 612 WP_223375679.1 ATP-dependent Clp protease proteolytic subunit Regulator
  BUC38_RS03705 - 732370..732642 (+) 273 WP_002937299.1 YlbG family protein -
  BUC38_RS03710 - 732774..733943 (+) 1170 WP_024418531.1 ABC transporter substrate-binding protein -
  BUC38_RS03715 - 734139..735026 (+) 888 WP_004298925.1 branched-chain amino acid ABC transporter permease -
  BUC38_RS03720 - 735029..735976 (+) 948 WP_024378398.1 branched-chain amino acid ABC transporter permease -
  BUC38_RS03725 - 735976..736740 (+) 765 WP_029176900.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22345.73 Da        Isoelectric Point: 6.7324

>NTDB_id=1145995 BUC38_RS03700 WP_223375679.1 731632..732243(+) (clpP) [Streptococcus suis strain LS9N]
MSKRSNFMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGL
AIVDTMNFIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKI
LADNSGKTVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKVK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1145995 BUC38_RS03700 WP_223375679.1 731632..732243(+) (clpP) [Streptococcus suis strain LS9N]
ATCTCGAAAAGGAGTAATTTTATGATTCCAGTAGTTATTGAACAAACTAGCCGTGGTGAGCGTTCTTATGATATTTACTC
ACGCCTTTTGAAAGACCGTATTATCATGTTGACAGGACCAGTTGAGGACAACATGGCAAACTCTATCATTGCACAATTGC
TTTTCCTTGATGCCCAAGACCCAACCAAAGATATTTACCTTTATGTAAATACACCTGGTGGATCTGTGTCAGCTGGTCTA
GCTATTGTCGATACCATGAACTTTATTAAAGCTGATGTTCAAACCATCGTTATGGGAACAGCTGCGAGCATGGGAACCAT
CATCGCTTCAAGCGGTGCCAAGGGCAAACGTTTCATGTTGCCAAATGCGGAATACATGATTCACCAGCCAATGGGTGGAA
CTGGTGGTGGCACTCAGCAAACAGATATGGCCATTGCAGCAGAACACCTATTAAAAACACGTAATAAGCTAGAAAAAATC
TTGGCAGACAACTCAGGTAAGACAGTCAAGCAAATCCACAAGGATGCGGAACGTGATTACTGGATGTCAGCTGAAGAAAC
CTTGGCTTACGGATTTATTGACCAGATTATGGACAATACAAAAGTCAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(18-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

92.347

96.552

0.892
  clpP Streptococcus pyogenes MGAS315

92.347

96.552

0.892
  clpP Streptococcus mutans UA159

90.306

96.552

0.872
  clpP Streptococcus thermophilus LMD-9

88.776

96.552

0.857
  clpP Streptococcus thermophilus LMG 18311

88.776

96.552

0.857
  clpP Streptococcus pneumoniae R6

89.231

96.059

0.857
  clpP Streptococcus pneumoniae Rx1

89.231

96.059

0.857
  clpP Streptococcus pneumoniae D39

89.231

96.059

0.857
  clpP Streptococcus pneumoniae TIGR4

89.231

96.059

0.857
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

83.756

97.044

0.813
  clpP Lactococcus lactis subsp. cremoris KW2

83.249

97.044

0.808
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

96.552

0.562
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

95.074

0.557

Multiple sequence alignment