Detailed information
Bioinformatically predicted
Overview
| Name | comR | Type | Regulator |
| Locus tag | STN4L_RS05835 | Genome accession | NZ_LS974444 |
| Coordinates | 1119256..1120155 (-) | Length | 299 a.a. |
| NCBI ID | WP_113870435.1 | Uniprot ID | - |
| Organism | Streptococcus thermophilus strain N4L | ||
| Function | activate transcription of comX; activate transcription of comS (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1114256..1125155
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| STN4L_RS05795 (STN4L_01345) | - | 1114258..1114773 (-) | 516 | WP_002949547.1 | AmiS/UreI family transporter | - |
| STN4L_RS10515 (STN4L_01346) | - | 1115178..1115549 (+) | 372 | WP_224103195.1 | hypothetical protein | - |
| STN4L_RS10520 (STN4L_01349) | - | 1115773..1116075 (+) | 303 | WP_231910735.1 | hypothetical protein | - |
| STN4L_RS10525 | - | 1116315..1116599 (+) | 285 | WP_014727318.1 | hypothetical protein | - |
| STN4L_RS05805 (STN4L_01350) | - | 1116562..1116879 (-) | 318 | WP_011225454.1 | DUF805 domain-containing protein | - |
| STN4L_RS05810 (STN4L_01351) | - | 1116987..1117555 (-) | 569 | Protein_1114 | ATP-binding cassette domain-containing protein | - |
| STN4L_RS10530 (STN4L_01353) | comA | 1117610..1117819 (-) | 210 | WP_002946147.1 | hypothetical protein | Regulator |
| STN4L_RS10535 | - | 1117892..1118557 (-) | 666 | Protein_1116 | ABC transporter transmembrane domain-containing protein | - |
| STN4L_RS10540 | - | 1118587..1119081 (-) | 495 | Protein_1117 | cysteine peptidase family C39 domain-containing protein | - |
| STN4L_RS05835 (STN4L_01358) | comR | 1119256..1120155 (-) | 900 | WP_113870435.1 | helix-turn-helix domain-containing protein | Regulator |
| STN4L_RS05840 (STN4L_01359) | - | 1120350..1121000 (-) | 651 | WP_113870436.1 | phosphatase PAP2 family protein | - |
| STN4L_RS05845 (STN4L_01360) | - | 1121003..1121560 (-) | 558 | WP_011680718.1 | ECF transporter S component | - |
| STN4L_RS05850 (STN4L_01361) | - | 1121871..1122410 (-) | 540 | WP_372585740.1 | tRNA (cytidine(34)-2'-O)-methyltransferase | - |
| STN4L_RS05855 (STN4L_01362) | trkA | 1122670..1124019 (+) | 1350 | WP_014621137.1 | Trk system potassium transporter TrkA | - |
Sequence
Protein
Download Length: 299 a.a. Molecular weight: 35271.66 Da Isoelectric Point: 5.0061
>NTDB_id=1143036 STN4L_RS05835 WP_113870435.1 1119256..1120155(-) (comR) [Streptococcus thermophilus strain N4L]
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNITIPDEYYE
LKNRLIKFPTYRNPDRIKSKLTLIEEVYEKFFDILPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKRKFST
NDLLVIDYYFFHLYGRKQYDKKLFERIIKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIENS
QLYSYKPSVFVLKAKYELLHKENKKEAAENYDKAIMFASVLEDSVLEESIKAGKLADGL
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNITIPDEYYE
LKNRLIKFPTYRNPDRIKSKLTLIEEVYEKFFDILPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKRKFST
NDLLVIDYYFFHLYGRKQYDKKLFERIIKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIENS
QLYSYKPSVFVLKAKYELLHKENKKEAAENYDKAIMFASVLEDSVLEESIKAGKLADGL
Nucleotide
Download Length: 900 bp
>NTDB_id=1143036 STN4L_RS05835 WP_113870435.1 1119256..1120155(-) (comR) [Streptococcus thermophilus strain N4L]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGCCAACAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGCCAGTTAATTCGTATTGAAAAGGGGGAGTCTCTCCCGTCTTTAGATAGATTATCGT
ATATTGCTAAACGTTTAGGAAAAAGTATGACAGAGTTATTGGATCAAGACAATATTACCATTCCTGACGAATATTATGAA
TTGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAACCCTGACAGAATAAAGTCTAAACTTACTTTGATTGAGGAAGT
CTATGAGAAATTTTTTGATATTCTTCCAGAAGAAGAATTATTAACTCTAGACATTCTCGAAAATATATTGAGTTTTACTA
GCTGGGAGGAGAGTCCAAAAGTTGAGGAGATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAGGAAATTCTCAACT
AACGATTTATTAGTCATTGACTATTATTTCTTTCATCTTTATGGGAGAAAACAGTATGACAAAAAACTATTTGAAAGAAT
TATAAAGAGAGTATTAAATCAGGAAATTTGGACAGATGATGTTTACAATATTGTTTTATTTAATGATTTGATGGCTATTG
CTGCTTTAAAGATTTTTCACAATTCCTTCTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTCATAGAAAACTCA
CAATTATATAGCTACAAGCCTAGTGTTTTTGTACTTAAGGCTAAATATGAACTTCTGCATAAAGAAAACAAGAAAGAGGC
TGCAGAGAATTATGATAAGGCCATAATGTTTGCTTCCGTTTTGGAAGACTCGGTTTTAGAGGAAAGTATAAAGGCAGGAA
AATTGGCAGATGGTTTATAG
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGCCAACAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGCCAGTTAATTCGTATTGAAAAGGGGGAGTCTCTCCCGTCTTTAGATAGATTATCGT
ATATTGCTAAACGTTTAGGAAAAAGTATGACAGAGTTATTGGATCAAGACAATATTACCATTCCTGACGAATATTATGAA
TTGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAACCCTGACAGAATAAAGTCTAAACTTACTTTGATTGAGGAAGT
CTATGAGAAATTTTTTGATATTCTTCCAGAAGAAGAATTATTAACTCTAGACATTCTCGAAAATATATTGAGTTTTACTA
GCTGGGAGGAGAGTCCAAAAGTTGAGGAGATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAGGAAATTCTCAACT
AACGATTTATTAGTCATTGACTATTATTTCTTTCATCTTTATGGGAGAAAACAGTATGACAAAAAACTATTTGAAAGAAT
TATAAAGAGAGTATTAAATCAGGAAATTTGGACAGATGATGTTTACAATATTGTTTTATTTAATGATTTGATGGCTATTG
CTGCTTTAAAGATTTTTCACAATTCCTTCTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTCATAGAAAACTCA
CAATTATATAGCTACAAGCCTAGTGTTTTTGTACTTAAGGCTAAATATGAACTTCTGCATAAAGAAAACAAGAAAGAGGC
TGCAGAGAATTATGATAAGGCCATAATGTTTGCTTCCGTTTTGGAAGACTCGGTTTTAGAGGAAAGTATAAAGGCAGGAA
AATTGGCAGATGGTTTATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comR | Streptococcus thermophilus LMG 18311 |
99.331 |
100 |
0.993 |
| comR | Streptococcus thermophilus LMD-9 |
98.662 |
100 |
0.987 |
| comR | Streptococcus salivarius strain HSISS4 |
94.649 |
100 |
0.946 |
| comR | Streptococcus salivarius SK126 |
93.98 |
100 |
0.94 |
| comR/comR2 | Streptococcus sobrinus strain NIDR 6715-7 |
41.806 |
100 |
0.418 |
| comR/comR1 | Streptococcus sobrinus strain NIDR 6715-7 |
41.472 |
100 |
0.415 |