Detailed information NTG1141933

Bioinformatically predicted

Overview

• Name: comGF/cglF
• Type: Machinery gene
• Locus tag: DQK98_RS10130
• Genome accession: NZ_LS483449
• Coordinates: 1895303..1895764 (-)
• Length: 153 a.a.
• NCBI ID: WP_000250545.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 4041STDY6836170
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1890303..1900764

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQK98_RS10100	-	1890614..1891438 (-)	825	WP_000727904.1	membrane protein insertase YidC	-
DQK98_RS10105	rnpA	1891413..1891784 (-)	372	WP_000739246.1	ribonuclease P protein component	-
DQK98_RS12175	-	1891801..1891932 (-)	132	WP_000768904.1	hypothetical protein	-
DQK98_RS10110	-	1891933..1893123 (-)	1191	WP_000167766.1	acetate kinase	-
DQK98_RS10115	comYH	1893174..1894127 (-)	954	WP_000345119.1	class I SAM-dependent methyltransferase	Machinery gene
DQK98_RS10120	-	1894188..1894775 (-)	588	WP_000679774.1	class I SAM-dependent methyltransferase	-
DQK98_RS10125	comGG/cglG	1894912..1895325 (-)	414	WP_000265630.1	competence type IV pilus minor pilin ComGG	Machinery gene
DQK98_RS10130	comGF/cglF	1895303..1895764 (-)	462	WP_000250545.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQK98_RS10135	comGE/cglE	1895727..1896029 (-)	303	WP_000413380.1	competence type IV pilus minor pilin ComGE	Machinery gene
DQK98_RS10140	comGD/cglD	1895992..1896396 (-)	405	WP_000588006.1	competence type IV pilus minor pilin ComGD	Machinery gene
DQK98_RS10145	comGC/cglC	1896389..1896715 (-)	327	WP_000738638.1	comG operon protein ComGC	Machinery gene
DQK98_RS10150	comGB/cglB	1896717..1897733 (-)	1017	WP_075270915.1	competence type IV pilus assembly protein ComGB	Machinery gene
DQK98_RS10155	comGA/cglA/cilD	1897681..1898622 (-)	942	WP_000249550.1	competence type IV pilus ATPase ComGA	Machinery gene
DQK98_RS10160	-	1898698..1899063 (-)	366	WP_000286415.1	DUF1033 family protein	-
DQK98_RS10165	-	1899214..1900272 (-)	1059	WP_000649466.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 153 a.a.
• Molecular weight: 17855.34 Da
• Isoelectric Point: 6.4832

>NTDB_id=1141933 DQK98_RS10130 WP_000250545.1 1895303..1895764(-) (comGF/cglF) [Streptococcus pneumoniae strain 4041STDY6836170]
MVQNSCWQSKSHKVKAFTLLESLLALLVISGGLLLFQAMSQLLISEVRYQQQSEQKEWLLFVDQLEAELDRSQFEKVEGN
RFYMKQDGKDIAIGKSKSDDFRKTDASGRGYQPMVYGLKSAQITEDNQLVHFRFQFQKGLEREFIYRVEKEES

Nucleotide

• Length: 462 bp

>NTDB_id=1141933 DQK98_RS10130 WP_000250545.1 1895303..1895764(-) (comGF/cglF) [Streptococcus pneumoniae strain 4041STDY6836170]
ATGGTTCAGAACAGTTGTTGGCAATCAAAGAGCCATAAGGTCAAGGCTTTTACCTTGTTAGAATCCCTGCTTGCCCTGCT
CGTCATCAGTGGAGGCTTACTCCTTTTTCAAGCTATGAGTCAGCTCCTCATTTCAGAAGTTCGCTACCAGCAACAAAGCG
AGCAAAAGGAGTGGCTCTTGTTTGTGGATCAACTTGAGGCAGAATTAGACCGTTCGCAGTTCGAAAAAGTGGAAGGCAAT
CGTTTCTATATGAAGCAAGATGGCAAGGACATCGCCATCGGTAAGTCAAAGTCAGACGATTTTCGTAAAACCGATGCTAG
TGGACGGGGGTATCAGCCTATGGTTTATGGCCTCAAATCAGCTCAGATTACAGAGGACAATCAACTGGTTCATTTTCGTT
TCCAGTTTCAAAAAGGCTTAGAAAGGGAGTTCATCTATCGTGTGGAAAAAGAAGAAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (45-141)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF/cglF	Streptococcus pneumoniae Rx1	93.464	100	0.935
comGF/cglF	Streptococcus pneumoniae D39	93.464	100	0.935
comGF/cglF	Streptococcus pneumoniae R6	93.464	100	0.935
comGF/cglF	Streptococcus pneumoniae TIGR4	93.464	100	0.935
comGF/cglF	Streptococcus mitis SK321	92.81	100	0.928
comGF/cglF	Streptococcus mitis NCTC 12261	91.503	100	0.915