Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   DQK98_RS10115 Genome accession   NZ_LS483449
Coordinates   1893174..1894127 (-) Length   317 a.a.
NCBI ID   WP_000345119.1    Uniprot ID   A0A0T7TMT7
Organism   Streptococcus pneumoniae strain 4041STDY6836170     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1888174..1899127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQK98_RS10090 - 1888935..1889558 (-) 624 WP_000932633.1 hypothetical protein -
  DQK98_RS10095 jag 1889609..1890595 (-) 987 WP_000260019.1 RNA-binding cell elongation regulator Jag/EloR -
  DQK98_RS10100 - 1890614..1891438 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  DQK98_RS10105 rnpA 1891413..1891784 (-) 372 WP_000739246.1 ribonuclease P protein component -
  DQK98_RS12175 - 1891801..1891932 (-) 132 WP_000768904.1 hypothetical protein -
  DQK98_RS10110 - 1891933..1893123 (-) 1191 WP_000167766.1 acetate kinase -
  DQK98_RS10115 comYH 1893174..1894127 (-) 954 WP_000345119.1 class I SAM-dependent methyltransferase Machinery gene
  DQK98_RS10120 - 1894188..1894775 (-) 588 WP_000679774.1 class I SAM-dependent methyltransferase -
  DQK98_RS10125 comGG/cglG 1894912..1895325 (-) 414 WP_000265630.1 competence type IV pilus minor pilin ComGG Machinery gene
  DQK98_RS10130 comGF/cglF 1895303..1895764 (-) 462 WP_000250545.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQK98_RS10135 comGE/cglE 1895727..1896029 (-) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQK98_RS10140 comGD/cglD 1895992..1896396 (-) 405 WP_000588006.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQK98_RS10145 comGC/cglC 1896389..1896715 (-) 327 WP_000738638.1 comG operon protein ComGC Machinery gene
  DQK98_RS10150 comGB/cglB 1896717..1897733 (-) 1017 WP_075270915.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQK98_RS10155 comGA/cglA/cilD 1897681..1898622 (-) 942 WP_000249550.1 competence type IV pilus ATPase ComGA Machinery gene
  DQK98_RS10160 - 1898698..1899063 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35746.93 Da        Isoelectric Point: 4.2434

>NTDB_id=1141931 DQK98_RS10115 WP_000345119.1 1893174..1894127(-) (comYH) [Streptococcus pneumoniae strain 4041STDY6836170]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEMDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1141931 DQK98_RS10115 WP_000345119.1 1893174..1894127(-) (comYH) [Streptococcus pneumoniae strain 4041STDY6836170]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCAGATGCCATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAATGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCCAAACAATCTAAGACTATTTTTATCTTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7TMT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.313

98.738

0.536
  comYH Streptococcus mutans UA159

53.994

98.738

0.533

Multiple sequence alignment