Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | DQN49_RS04520 | Genome accession | NZ_LS483429 |
| Coordinates | 842319..842768 (+) | Length | 149 a.a. |
| NCBI ID | WP_006996184.1 | Uniprot ID | A0AAV2U2D0 |
| Organism | Haemophilus aegyptius strain NCTC8502 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 837319..847768
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN49_RS04500 (NCTC8502_00919) | rsmE | 837783..838520 (-) | 738 | WP_006996180.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| DQN49_RS04505 (NCTC8502_00920) | lnt | 838570..840099 (-) | 1530 | WP_013525535.1 | apolipoprotein N-acyltransferase | - |
| DQN49_RS04510 (NCTC8502_00921) | corC | 840122..841021 (-) | 900 | WP_006996182.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| DQN49_RS04515 (NCTC8502_00922) | ampD | 841644..842204 (-) | 561 | WP_006996183.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| DQN49_RS04520 (NCTC8502_00923) | pilA | 842319..842768 (+) | 450 | WP_006996184.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| DQN49_RS04525 (NCTC8502_00924) | pilB | 842765..844159 (+) | 1395 | WP_006996185.1 | GspE/PulE family protein | Machinery gene |
| DQN49_RS04530 (NCTC8502_00925) | pilC | 844156..845373 (+) | 1218 | WP_006996186.1 | type II secretion system F family protein | Machinery gene |
| DQN49_RS04535 (NCTC8502_00926) | pilD | 845370..846062 (+) | 693 | WP_006996187.1 | A24 family peptidase | Machinery gene |
| DQN49_RS04540 (NCTC8502_00927) | rho | 846118..847380 (-) | 1263 | WP_006996188.1 | transcription termination factor Rho | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15542.86 Da Isoelectric Point: 8.0922
>NTDB_id=1141229 DQN49_RS04520 WP_006996184.1 842319..842768(+) (pilA) [Haemophilus aegyptius strain NCTC8502]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTNCTGGKNGIA
ADITAAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTNCTGGKNGIA
ADITAAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
Nucleotide
Download Length: 450 bp
>NTDB_id=1141229 DQN49_RS04520 WP_006996184.1 842319..842768(+) (pilA) [Haemophilus aegyptius strain NCTC8502]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAACTGTACGGGTGGAAAAAATGGTATTGCA
GCAGATATAACCGCAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTTACACAATGA
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAACTGTACGGGTGGAAAAAATGGTATTGCA
GCAGATATAACCGCAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTTACACAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
99.329 |
100 |
0.993 |
| pilA | Haemophilus influenzae Rd KW20 |
91.275 |
100 |
0.913 |
| pilA | Glaesserella parasuis strain SC1401 |
54.362 |
100 |
0.544 |
| pilA2 | Legionella pneumophila str. Paris |
42.177 |
98.658 |
0.416 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.177 |
98.658 |
0.416 |
| pilA | Vibrio campbellii strain DS40M4 |
39.716 |
94.631 |
0.376 |