Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   DQN75_RS03505 Genome accession   NZ_LS483420
Coordinates   658475..658657 (+) Length   60 a.a.
NCBI ID   WP_014635572.1    Uniprot ID   A0A8B6J386
Organism   Streptococcus pyogenes strain NCTC13739     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 624367..658657 658475..658657 within 0


Gene organization within MGE regions


Location: 624367..658657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN75_RS03245 (NCTC13739_00638) - 624367..624642 (+) 276 WP_002983920.1 HU family DNA-binding protein -
  DQN75_RS03250 (NCTC13739_00639) - 624731..625873 (-) 1143 WP_003051793.1 tyrosine-type recombinase/integrase -
  DQN75_RS03255 (NCTC13739_00640) - 625997..626515 (-) 519 WP_010922481.1 HIRAN domain-containing protein -
  DQN75_RS03260 (NCTC13739_00641) - 626527..627282 (-) 756 WP_010922480.1 helix-turn-helix domain-containing protein -
  DQN75_RS03265 (NCTC13739_00642) - 627485..627697 (+) 213 WP_010922479.1 helix-turn-helix domain-containing protein -
  DQN75_RS03270 (NCTC13739_00644) - 627967..628278 (+) 312 WP_010922478.1 excisionase -
  DQN75_RS03275 (NCTC13739_00645) - 628280..628465 (+) 186 WP_010922477.1 hypothetical protein -
  DQN75_RS09100 - 628559..628828 (+) 270 WP_011106700.1 replication protein -
  DQN75_RS03285 (NCTC13739_00646) - 628969..629355 (+) 387 WP_011017564.1 DnaD domain-containing protein -
  DQN75_RS03290 (NCTC13739_00647) - 629336..629569 (+) 234 WP_002988350.1 hypothetical protein -
  DQN75_RS03295 (NCTC13739_00648) - 629566..629706 (+) 141 WP_011017992.1 hypothetical protein -
  DQN75_RS03300 (NCTC13739_00649) - 629715..629921 (+) 207 WP_011017565.1 hypothetical protein -
  DQN75_RS03305 (NCTC13739_00650) - 629977..630306 (+) 330 WP_063629030.1 hypothetical protein -
  DQN75_RS03310 (NCTC13739_00651) bet 630309..631100 (+) 792 WP_002990071.1 phage recombination protein Bet -
  DQN75_RS03315 (NCTC13739_00652) - 631110..632138 (+) 1029 WP_011888756.1 DUF1351 domain-containing protein -
  DQN75_RS03320 (NCTC13739_00653) - 632335..632676 (+) 342 WP_011888757.1 hypothetical protein -
  DQN75_RS03325 (NCTC13739_00654) - 632673..633185 (+) 513 WP_111684749.1 hypothetical protein -
  DQN75_RS09105 (NCTC13739_00655) - 633172..633357 (+) 186 WP_011017985.1 hypothetical protein -
  DQN75_RS03335 (NCTC13739_00656) - 633362..633631 (+) 270 WP_111684751.1 hypothetical protein -
  DQN75_RS03340 (NCTC13739_00657) - 633634..634383 (+) 750 WP_080465051.1 DNA-methyltransferase -
  DQN75_RS03345 (NCTC13739_00659) - 634892..635311 (+) 420 WP_111684753.1 DUF1492 domain-containing protein -
  DQN75_RS03350 - 635418..635762 (+) 345 WP_063629033.1 HNH endonuclease signature motif containing protein -
  DQN75_RS03355 (NCTC13739_00660) - 635911..636267 (+) 357 WP_032461152.1 hypothetical protein -
  DQN75_RS03360 (NCTC13739_00661) - 636264..637532 (+) 1269 WP_032461151.1 phage portal protein -
  DQN75_RS03365 (NCTC13739_00662) - 637525..639018 (+) 1494 WP_111684755.1 hypothetical protein -
  DQN75_RS03370 (NCTC13739_00663) - 639024..639248 (+) 225 WP_002994100.1 hypothetical protein -
  DQN75_RS03375 (NCTC13739_00664) - 639298..639477 (+) 180 WP_032461150.1 hypothetical protein -
  DQN75_RS03380 (NCTC13739_00665) - 639470..639736 (+) 267 WP_002986828.1 hypothetical protein -
  DQN75_RS03385 (NCTC13739_00666) - 639738..639974 (+) 237 WP_011888764.1 hypothetical protein -
  DQN75_RS03390 (NCTC13739_00667) - 640056..641471 (+) 1416 WP_063631462.1 hypothetical protein -
  DQN75_RS03395 (NCTC13739_00668) - 641542..642003 (+) 462 WP_032461147.1 capsid assembly scaffolding protein Gp46 family protein -
  DQN75_RS03400 (NCTC13739_00669) - 642028..642939 (+) 912 WP_063631463.1 phage major capsid protein -
  DQN75_RS03405 (NCTC13739_00670) - 642939..643139 (+) 201 WP_010922460.1 hypothetical protein -
  DQN75_RS03410 (NCTC13739_00671) - 643149..643571 (+) 423 WP_021733479.1 phage Gp19/Gp15/Gp42 family protein -
  DQN75_RS03415 (NCTC13739_00672) - 643531..643869 (+) 339 WP_011054681.1 hypothetical protein -
  DQN75_RS03420 (NCTC13739_00673) - 643862..644098 (+) 237 WP_111676592.1 hypothetical protein -
  DQN75_RS03425 (NCTC13739_00674) - 644099..644434 (+) 336 WP_000573598.1 hypothetical protein -
  DQN75_RS03430 (NCTC13739_00675) - 644446..645030 (+) 585 WP_111684757.1 phage tail protein -
  DQN75_RS03435 (NCTC13739_00676) - 645040..645303 (+) 264 WP_032461128.1 hypothetical protein -
  DQN75_RS03440 (NCTC13739_00677) - 645318..645689 (+) 372 WP_032461127.1 DUF5361 domain-containing protein -
  DQN75_RS03445 (NCTC13739_00678) - 645689..648052 (+) 2364 WP_111676586.1 hypothetical protein -
  DQN75_RS03450 (NCTC13739_00679) - 648049..648744 (+) 696 WP_111676584.1 hypothetical protein -
  DQN75_RS03455 (NCTC13739_00680) - 648726..650696 (+) 1971 WP_172454111.1 phage tail spike protein -
  DQN75_RS03460 (NCTC13739_00681) hylP 650693..651718 (+) 1026 WP_111684761.1 hyaluronidase HylP -
  DQN75_RS03465 (NCTC13739_00682) - 651731..653671 (+) 1941 WP_063631467.1 gp58-like family protein -
  DQN75_RS03470 (NCTC13739_00683) - 653683..654111 (+) 429 WP_111684763.1 DUF1617 family protein -
  DQN75_RS03475 (NCTC13739_00684) - 654114..654746 (+) 633 WP_011017396.1 hypothetical protein -
  DQN75_RS03480 (NCTC13739_00685) - 654758..655030 (+) 273 WP_011017397.1 hypothetical protein -
  DQN75_RS03485 (NCTC13739_00686) - 655027..655254 (+) 228 WP_003058873.1 phage holin -
  DQN75_RS03490 (NCTC13739_00688) - 655373..656590 (+) 1218 WP_014635574.1 peptidoglycan amidohydrolase family protein -
  DQN75_RS03495 (NCTC13739_00689) speC 656659..657366 (-) 708 WP_111684765.1 streptococcal pyrogenic exotoxin SpeC -
  DQN75_RS03500 (NCTC13739_00690) mf2 657477..658235 (-) 759 WP_111684767.1 DNase Mf2 -
  DQN75_RS03505 (NCTC13739_00691) prx 658475..658657 (+) 183 WP_014635572.1 hypothetical protein Regulator

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 7067.01 Da        Isoelectric Point: 4.1079

>NTDB_id=1141003 DQN75_RS03505 WP_014635572.1 658475..658657(+) (prx) [Streptococcus pyogenes strain NCTC13739]
MLTYDEFKQAIDNGYITGDTVMIVRKNGQIFDYVLPNEKIRDWEVVTDEKVEEVLVELSR

Nucleotide


Download         Length: 183 bp        

>NTDB_id=1141003 DQN75_RS03505 WP_014635572.1 658475..658657(+) (prx) [Streptococcus pyogenes strain NCTC13739]
ATGCTAACATACGACGAATTTAAGCAAGCAATTGACAACGGATATATCACAGGAGACACAGTTATGATCGTGCGTAAAAA
CGGACAGATTTTTGATTATGTTTTGCCGAATGAGAAGATAAGAGATTGGGAGGTTGTGACAGACGAAAAAGTGGAAGAGG
TGCTGGTGGAGCTTTCGAGATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A8B6J386

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

90

100

0.9

  prx Streptococcus pyogenes MGAS8232

85

100

0.85

  prx Streptococcus pyogenes MGAS315

80

100

0.8

  prx Streptococcus pyogenes MGAS315

73.333

100

0.733

  prx Streptococcus pyogenes MGAS315

90.244

68.333

0.617

  prx Streptococcus pyogenes MGAS315

85.714

70

0.6

  prx Streptococcus pyogenes MGAS315

78.571

70

0.55


Multiple sequence alignment