Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   DQN54_RS04755 Genome accession   NZ_LS483417
Coordinates   876650..877300 (+) Length   216 a.a.
NCBI ID   WP_000387330.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC11902     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 871650..882300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN54_RS04710 (NCTC11902_00889) - 872133..872348 (+) 216 WP_001232082.1 YozE family protein -
  DQN54_RS04715 (NCTC11902_00890) - 872434..873402 (+) 969 WP_000658183.1 PhoH family protein -
  DQN54_RS04725 (NCTC11902_00891) - 873595..874095 (+) 501 WP_000566988.1 GNAT family N-acetyltransferase -
  DQN54_RS04730 (NCTC11902_00892) - 874098..874424 (+) 327 Protein_891 TfoX/Sxy family protein -
  DQN54_RS11745 ald 874725..875836 (-) 1112 Protein_892 alanine dehydrogenase -
  DQN54_RS04750 (NCTC11902_00895) - 876013..876582 (+) 570 WP_000443899.1 GNAT family N-acetyltransferase -
  DQN54_RS04755 (NCTC11902_00896) comEA/celA/cilE 876650..877300 (+) 651 WP_000387330.1 ComEA family DNA-binding protein Machinery gene
  DQN54_RS04760 (NCTC11902_00897) comEC/celB 877284..879524 (+) 2241 WP_000942406.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQN54_RS04765 - 879703..879891 (+) 189 WP_001810955.1 hypothetical protein -
  DQN54_RS04770 (NCTC11902_00898) - 879923..880510 (+) 588 WP_000933550.1 ATP-binding cassette domain-containing protein -
  DQN54_RS04775 (NCTC11902_00899) - 880514..881695 (+) 1182 WP_000655933.1 hypothetical protein -

Sequence


Protein


Download         Length: 216 a.a.        Molecular weight: 23229.65 Da        Isoelectric Point: 5.5171

>NTDB_id=1140868 DQN54_RS04755 WP_000387330.1 876650..877300(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain NCTC11902]
MEAIIEKIKEYKIIVICTGLGLLVGGFFLLKPAPQTPVKETNLQAEVAAVSKDLVSEKEVNKEEKEEPLEQDLITVDVKG
AVKSPGIYDLPVGSRVNDAVQKAGGLTEQADSKSLNLAQKVSDEALVYVPTKGEEAVSQQTGLGTASSISKEKKVNLNKA
SLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGGKTIEKLKDYVTVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1140868 DQN54_RS04755 WP_000387330.1 876650..877300(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain NCTC11902]
ATGGAAGCAATTATCGAGAAAATCAAAGAGTATAAAATCATCGTCATCTGTACTGGTCTGGGCTTGCTTGTAGGAGGATT
TTTCCTGCTAAAACCAGCTCCACAAACACCTGTCAAAGAGACGAATTTGCAGGCTGAAGTCGCAGCTGTTTCCAAGGATT
TGGTATCCGAAAAGGAAGTGAACAAGGAAGAAAAGGAAGAACCCCTTGAACAAGATCTAATCACAGTAGATGTCAAAGGT
GCTGTCAAATCGCCAGGGATTTATGACTTGCCTGTAGGTAGTCGAGTCAATGATGCTGTTCAGAAGGCTGGTGGCTTGAC
AGAGCAAGCAGACAGCAAGTCGCTCAATCTAGCTCAGAAAGTTAGTGATGAGGCTCTGGTTTACGTTCCTACTAAGGGAG
AAGAAGCAGTTAGCCAACAGACTGGTTTGGGGACAGCTTCTTCAATAAGCAAGGAAAAGAAGGTCAATCTCAACAAGGCC
AGTCTGGAAGAACTCAAGCAGGTCAAGGGACTGGGAGGAAAACGAGCTCAGGACATTATCGACCATCGTGAGGCAAATGG
CAAGTTCAAGTCAGTAGACGAGCTCAAGAAGGTCTCTGGCATTGGTGGCAAAACAATAGAAAAGCTTAAAGACTATGTTA
CAGTGGATTAA

Domains


Predicted by InterproScan.

(151-214)

(76-126)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae Rx1

100

100

1

  comEA/celA/cilE Streptococcus pneumoniae D39

100

100

1

  comEA/celA/cilE Streptococcus pneumoniae R6

100

100

1

  comEA/celA/cilE Streptococcus pneumoniae TIGR4

97.222

100

0.972

  comEA/celA/cilE Streptococcus mitis NCTC 12261

96.296

100

0.963

  comEA/celA/cilE Streptococcus mitis SK321

90.278

100

0.903

  comEA Lactococcus lactis subsp. cremoris KW2

43.172

100

0.454

  comEA Bacillus subtilis subsp. subtilis str. 168

41.579

87.963

0.366

  comEA Latilactobacillus sakei subsp. sakei 23K

33.476

100

0.361


Multiple sequence alignment