Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   DQM86_RS05545 Genome accession   NZ_LS483407
Coordinates   1089717..1089899 (-) Length   60 a.a.
NCBI ID   WP_111674629.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13744     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1084717..1094899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM86_RS05530 (NCTC13744_01096) - 1085154..1085849 (-) 696 WP_109820919.1 phosphoglycerate mutase -
  DQM86_RS05535 (NCTC13744_01097) - 1086088..1087023 (+) 936 WP_021299339.1 dihydroorotate oxidase -
  DQM86_RS05540 (NCTC13744_01098) - 1087323..1089185 (-) 1863 WP_011284945.1 heavy metal translocating P-type ATPase -
  DQM86_RS05545 (NCTC13744_01099) prx 1089717..1089899 (-) 183 WP_111674629.1 Paratox Regulator
  DQM86_RS05550 (NCTC13744_01100) entC3 1090012..1090794 (-) 783 WP_002988472.1 enterotoxin type C3 EntC3 -
  DQM86_RS05555 (NCTC13744_01101) - 1091042..1092166 (-) 1125 WP_002988467.1 Fic family protein -
  DQM86_RS05560 (NCTC13744_01102) - 1092302..1093519 (-) 1218 WP_111674630.1 peptidoglycan amidohydrolase family protein -
  DQM86_RS05565 (NCTC13744_01104) - 1093638..1093865 (-) 228 WP_111674631.1 phage holin -
  DQM86_RS05570 (NCTC13744_01105) - 1093862..1094134 (-) 273 WP_011017397.1 hypothetical protein -
  DQM86_RS05575 (NCTC13744_01106) - 1094152..1094763 (-) 612 WP_023079933.1 DUF1366 domain-containing protein -

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 6948.86 Da        Isoelectric Point: 4.1954

>NTDB_id=1140462 DQM86_RS05545 WP_111674629.1 1089717..1089899(-) (prx) [Streptococcus pyogenes strain NCTC13744]
MLTYNEFKQAIDNGYIAGDTVAIVRKSGQIFDYVLPNEKIRDWEVVTDEKVEEVLVELSR

Nucleotide


Download         Length: 183 bp        

>NTDB_id=1140462 DQM86_RS05545 WP_111674629.1 1089717..1089899(-) (prx) [Streptococcus pyogenes strain NCTC13744]
ATGCTAACATACAACGAGTTTAAGCAAGCGATTGACAATGGATATATCGCAGGCGATACAGTAGCGATCGTGCGCAAGAG
CGGACAGATTTTTGATTATGTGTTGCCGAATGAGAAGATAAGAGATTGGGAGGTTGTGACAGACGAAAAAGTGGAAGAGG
TGCTAGTGGAGCTTTCGAGATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS8232

86.667

100

0.867

  prx Streptococcus pyogenes MGAS315

83.333

100

0.833

  prx Streptococcus pyogenes MGAS315

76.667

100

0.767

  prx Streptococcus pyogenes MGAS315

70

100

0.7

  prx Streptococcus pyogenes MGAS315

87.805

68.333

0.6

  prx Streptococcus pyogenes MGAS315

78.571

70

0.55

  prx Streptococcus pyogenes MGAS315

76.19

70

0.533


Multiple sequence alignment