Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQM79_RS01510 Genome accession   NZ_LS483401
Coordinates   276693..277244 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10085     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 271693..282244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM79_RS01510 (NCTC10085_00299) comX/sigX/comX2/sigX2 276693..277244 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQM79_RS01515 (NCTC10085_00300) - 277803..278330 (+) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  DQM79_RS01520 (NCTC10085_00301) yqeH 278330..279448 (+) 1119 WP_002991096.1 ribosome biogenesis GTPase YqeH -
  DQM79_RS01525 (NCTC10085_00302) yhbY 279473..279781 (+) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  DQM79_RS01530 (NCTC10085_00303) - 279850..280482 (+) 633 WP_002991091.1 nicotinate-nucleotide adenylyltransferase -
  DQM79_RS01535 (NCTC10085_00304) yqeK 280479..281072 (+) 594 WP_002985989.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DQM79_RS01540 (NCTC10085_00305) rsfS 281096..281449 (+) 354 WP_002991088.1 ribosome silencing factor -
  DQM79_RS01545 (NCTC10085_00306) - 281497..282240 (+) 744 WP_002991085.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=1140279 DQM79_RS01510 WP_010921894.1 276693..277244(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC10085]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1140279 DQM79_RS01510 WP_010921894.1 276693..277244(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC10085]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGATGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.