Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQN61_RS08510 Genome accession   NZ_LS483391
Coordinates   1600561..1601112 (-) Length   183 a.a.
NCBI ID   WP_011018214.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8320     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1595561..1606112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN61_RS08485 (NCTC8320_01695) - 1596927..1597772 (+) 846 WP_002982833.1 mechanosensitive ion channel family protein -
  DQN61_RS08490 (NCTC8320_01696) - 1597837..1598397 (-) 561 WP_002995157.1 TIGR01440 family protein -
  DQN61_RS08495 (NCTC8320_01697) - 1598411..1598881 (-) 471 WP_002982824.1 ECF transporter S component -
  DQN61_RS08500 (NCTC8320_01698) - 1598871..1599635 (-) 765 WP_002982821.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DQN61_RS08505 (NCTC8320_01699) truA 1599625..1600374 (-) 750 WP_002988132.1 tRNA pseudouridine(38-40) synthase TruA -
  DQN61_RS08510 (NCTC8320_01700) comX/sigX/comX2/sigX2 1600561..1601112 (-) 552 WP_011018214.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.12 Da        Isoelectric Point: 10.1133

>NTDB_id=1140005 DQN61_RS08510 WP_011018214.1 1600561..1601112(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC8320]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFKALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1140005 DQN61_RS08510 WP_011018214.1 1600561..1601112(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC8320]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTAAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.