Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   DQM63_RS11520 Genome accession   NZ_LS483385
Coordinates   2294717..2295889 (+) Length   390 a.a.
NCBI ID   WP_002899524.1    Uniprot ID   A0A428AHE2
Organism   Streptococcus sanguinis strain NCTC7863     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2289717..2300889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM63_RS11495 (NCTC7863_02270) comE 2291498..2292262 (-) 765 WP_002899529.1 competence system response regulator transcription factor ComE Regulator
  DQM63_RS11500 (NCTC7863_02271) comD 2292268..2293602 (-) 1335 WP_002899527.1 competence system sensor histidine kinase ComD -
  DQM63_RS11505 (NCTC7863_02272) - 2293630..2293737 (-) 108 WP_002894290.1 hypothetical protein -
  DQM63_RS11515 (NCTC7863_02274) rlmH 2294034..2294513 (-) 480 WP_002899526.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQM63_RS11520 (NCTC7863_02275) htrA 2294717..2295889 (+) 1173 WP_002899524.1 S1C family serine protease Regulator
  DQM63_RS11525 (NCTC7863_02276) spo0J 2295953..2296714 (+) 762 WP_002899523.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 390 a.a.        Molecular weight: 40797.56 Da        Isoelectric Point: 4.7432

>NTDB_id=1139664 DQM63_RS11520 WP_002899524.1 2294717..2295889(+) (htrA) [Streptococcus sanguinis strain NCTC7863]
MKNSSNAIKKALLLFAVLIVGFIGGSLGNYVTTLVTSRVKMNGNSTTSVATSYKNSTDISEAVKKVQNAVVSVITYAESS
SSVINDESSNDESQISSEGSGVIYKKDGKSAYLVTNTHVLNGSTNVDILLADGNKVPGEVVGSDVYSDISVVKISSEKVT
DVAEFGDSGSLTVGETAIAIGSPLGTEYANSVTQGIISSLGRNVTLQSENGENISTTALQTDAAINPGNSGGPLINIQGQ
VIGITSSKISTNGQTSVEGMGFAIPSNDVVNIINQLEKNGTVTRPALGIQMMDLSNLTTSDFSKLNLPSSVKSGILVRSV
QQGMPADGKLQKNDVITKVDNTDVESTSDLQSALYKHSIGDEVEITYYRDGKSQTVKIKLTKSTKELSSN

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=1139664 DQM63_RS11520 WP_002899524.1 2294717..2295889(+) (htrA) [Streptococcus sanguinis strain NCTC7863]
ATGAAAAACTCTTCAAATGCCATCAAAAAGGCTTTATTGCTTTTTGCAGTGTTAATTGTAGGTTTTATCGGCGGAAGTTT
AGGGAATTATGTTACTACATTAGTAACTTCACGTGTAAAAATGAATGGAAATTCAACAACTAGTGTAGCTACTTCATATA
AAAACTCTACAGACATTTCGGAAGCTGTGAAAAAGGTTCAAAATGCGGTTGTTTCAGTAATTACTTATGCTGAATCTTCT
AGTAGCGTTATTAATGATGAATCTTCCAACGATGAATCACAAATTTCCAGTGAAGGTTCTGGTGTAATTTATAAAAAAGA
CGGAAAGTCAGCCTATCTGGTAACCAACACCCACGTTCTTAACGGATCAACCAATGTAGATATCTTGCTAGCTGACGGAA
ACAAGGTTCCAGGTGAAGTAGTTGGATCAGATGTTTATTCAGATATTTCTGTCGTTAAAATTAGTTCTGAAAAAGTAACT
GATGTCGCTGAATTTGGAGATTCTGGTTCTCTGACAGTTGGTGAGACAGCTATCGCTATCGGAAGTCCTCTTGGAACAGA
ATATGCTAACTCTGTCACACAAGGAATTATTTCTAGTTTAGGTAGAAACGTTACGTTACAATCTGAAAATGGTGAAAATA
TTTCAACAACTGCACTGCAAACAGATGCTGCAATTAATCCTGGTAACTCTGGCGGCCCATTGATTAACATCCAAGGACAA
GTTATTGGGATTACTTCAAGTAAGATTTCAACAAATGGGCAAACCTCTGTTGAAGGGATGGGATTTGCGATTCCGTCTAA
TGATGTCGTAAATATTATCAATCAACTTGAGAAAAACGGAACAGTCACACGTCCTGCTTTAGGAATTCAAATGATGGATT
TATCTAATCTGACAACTTCTGATTTTTCTAAATTAAATCTTCCTTCTTCAGTGAAATCAGGTATTCTTGTTCGCTCTGTT
CAGCAAGGAATGCCTGCTGATGGCAAGCTTCAAAAAAATGATGTCATTACAAAAGTAGATAACACAGATGTGGAATCCAC
TAGTGATTTACAATCTGCTCTCTACAAGCATAGTATTGGAGATGAAGTAGAAATTACTTATTATCGAGATGGTAAATCTC
AAACAGTCAAAATCAAACTCACTAAATCAACAAAAGAGTTAAGCTCAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A428AHE2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

67.424

100

0.685

  htrA Streptococcus mitis NCTC 12261

64.122

100

0.646

  htrA Streptococcus pneumoniae Rx1

64.122

100

0.646

  htrA Streptococcus pneumoniae D39

64.122

100

0.646

  htrA Streptococcus pneumoniae R6

64.122

100

0.646

  htrA Streptococcus pneumoniae TIGR4

64.122

100

0.646

  htrA Streptococcus mutans UA159

54.937

100

0.556


Multiple sequence alignment