Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQM87_RS07980 Genome accession   NZ_LS483384
Coordinates   1555238..1555789 (-) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13743     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1550238..1560789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM87_RS07950 (NCTC13743_01593) rsfS 1551012..1551365 (-) 354 WP_168390585.1 ribosome silencing factor -
  DQM87_RS07955 (NCTC13743_01594) yqeK 1551389..1551982 (-) 594 WP_111705214.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DQM87_RS07960 (NCTC13743_01595) - 1551979..1552611 (-) 633 WP_011184179.1 nicotinate-nucleotide adenylyltransferase -
  DQM87_RS07965 (NCTC13743_01596) yhbY 1552680..1552988 (-) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  DQM87_RS07970 (NCTC13743_01597) yqeH 1553012..1554130 (-) 1119 WP_023078962.1 ribosome biogenesis GTPase YqeH -
  DQM87_RS07975 (NCTC13743_01598) - 1554130..1554657 (-) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  DQM87_RS07980 (NCTC13743_01599) comX/sigX/comX2/sigX2 1555238..1555789 (-) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=1139593 DQM87_RS07980 WP_010921894.1 1555238..1555789(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC13743]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1139593 DQM87_RS07980 WP_010921894.1 1555238..1555789(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NCTC13743]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.