Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   DQM87_RS06210 Genome accession   NZ_LS483384
Coordinates   1228277..1228456 (-) Length   59 a.a.
NCBI ID   WP_065361223.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13743     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1223277..1233456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM87_RS06195 (NCTC13743_01244) gyrB 1224922..1226874 (-) 1953 WP_111705133.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  DQM87_RS06200 (NCTC13743_01245) - 1226875..1227435 (-) 561 WP_023612339.1 HAD-IA family hydrolase -
  DQM87_RS09610 - 1227538..1227808 (-) 271 Protein_1132 rod shape-determining protein RodA -
  DQM87_RS09865 - 1227813..1228096 (+) 284 Protein_1133 site-specific integrase -
  DQM87_RS06210 (NCTC13743_01247) prx 1228277..1228456 (-) 180 WP_065361223.1 Paratox Regulator
  DQM87_RS06215 (NCTC13743_01248) sda1 1228695..1229876 (+) 1182 WP_065358777.1 streptodornase Sda1 -
  DQM87_RS06220 (NCTC13743_01249) - 1229989..1230825 (-) 837 WP_048327804.1 hypothetical protein -
  DQM87_RS06225 (NCTC13743_01250) - 1230829..1231371 (-) 543 WP_048327805.1 Panacea domain-containing protein -
  DQM87_RS06230 (NCTC13743_01251) - 1231525..1232277 (-) 753 WP_065358779.1 CHAP domain-containing protein -
  DQM87_RS06235 (NCTC13743_01253) - 1232394..1232579 (-) 186 WP_002988802.1 holin -
  DQM87_RS06240 (NCTC13743_01254) - 1232576..1232875 (-) 300 WP_002988799.1 hypothetical protein -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6934.89 Da        Isoelectric Point: 3.8662

>NTDB_id=1139580 DQM87_RS06210 WP_065361223.1 1228277..1228456(-) (prx) [Streptococcus pyogenes strain NCTC13743]
MLTYDEFKQAIDDGYITGDTVTIVRKNGQIFDYVLPGEEVRPWEIVIEERVAEVLMELW

Nucleotide


Download         Length: 180 bp        

>NTDB_id=1139580 DQM87_RS06210 WP_065361223.1 1228277..1228456(-) (prx) [Streptococcus pyogenes strain NCTC13743]
ATGCTAACATACGACGAATTTAAGCAAGCAATCGATGACGGATATATCACAGGAGACACAGTCACGATTGTGCGCAAAAA
CGGACAAATTTTTGATTATGTCTTGCCAGGAGAGGAAGTCAGGCCATGGGAGATTGTGATCGAGGAGAGGGTGGCGGAGG
TGTTGATGGAATTGTGGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

82.759

98.305

0.814
  prx Streptococcus pyogenes MGAS315

81.034

98.305

0.797
  prx Streptococcus pyogenes MGAS315

75.862

98.305

0.746
  prx Streptococcus pyogenes MGAS8232

74.138

98.305

0.729
  prx Streptococcus pyogenes MGAS315

90.476

71.186

0.644
  prx Streptococcus pyogenes MGAS315

90.244

69.492

0.627
  prx Streptococcus pyogenes MGAS315

78.049

69.492

0.542

Multiple sequence alignment