Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQM67_RS07605 Genome accession   NZ_LS483383
Coordinates   1512161..1514137 (-) Length   658 a.a.
NCBI ID   WP_005591878.1    Uniprot ID   A0AAV3EDU6
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1507161..1519137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS07585 (NCTC12479_01474) amiF 1507660..1508586 (-) 927 WP_005591882.1 ATP-binding cassette domain-containing protein Regulator
  DQM67_RS07590 (NCTC12479_01475) amiE 1508597..1509664 (-) 1068 WP_005591881.1 ABC transporter ATP-binding protein Regulator
  DQM67_RS07595 (NCTC12479_01476) amiD 1509673..1510599 (-) 927 WP_005591880.1 oligopeptide ABC transporter permease OppC Regulator
  DQM67_RS07600 (NCTC12479_01477) amiC 1510599..1512095 (-) 1497 WP_005591879.1 ABC transporter permease Regulator
  DQM67_RS07605 (NCTC12479_01478) amiA3 1512161..1514137 (-) 1977 WP_005591878.1 peptide ABC transporter substrate-binding protein Regulator
  DQM67_RS07610 (NCTC12479_01479) - 1514278..1516032 (-) 1755 WP_005591877.1 glycerophosphodiester phosphodiesterase -
  DQM67_RS07615 (NCTC12479_01480) - 1516189..1516683 (-) 495 WP_005591876.1 DUF536 domain-containing protein -
  DQM67_RS07620 (NCTC12479_01481) - 1516799..1517527 (-) 729 WP_005591875.1 pseudouridine synthase -
  DQM67_RS07625 (NCTC12479_01482) - 1517537..1518688 (-) 1152 WP_005591874.1 MFS transporter -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72370.42 Da        Isoelectric Point: 4.9034

>NTDB_id=1139522 DQM67_RS07605 WP_005591878.1 1512161..1514137(-) (amiA3) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MKKSKVLALAGVSLLSVGVLAACSGSSKGNSAAKAYNYVYTAEPETLDYVTSGKASTADLVTNGVDGLLENDQYGNFVPS
IAESWTVSKDGLTYTYKIRKDAKWYTSEGEEYGDVTAQDFVTGLKHAADKKSEALYLVQHSVKGLDDYVNGKTTDFSTVG
VKAVDDHTLQYTLNQPEPQWNSKTTSQVLWPVNAEFLKKQGDKFGQSTDPSSILYNGPFLMKSITAKSAVEYQKNENYWD
KENVHVDTIKLSYFDGQDQDALARNFKDGAYTVARLYPTSSNYAGVEKDFKDNIFFTPPSAGVAVMGVNIDRQSYNHTSK
TTDAQKSATKKAILNKDFRQALNFAIDRTSYSAQINGKEGAPYAVRNTYVPPTFVQAGDKSFGDVVEEKVAALGDEWKGV
KLEDGQDGLFNAEKAKAEFAKAKAALQADGVEFPIHLDLPVAQTAKPMVNRAQSLKQSVEKTLGTENVVVDIQQMSEDDL
YNITYYAPNAAGEDWDISTAVGWNPDYQDPSTYLDILKTTSTETTKTYLGFEGADNAAAKQVGLDEYDRLVDEAGKETSD
VVTRYEKYAAAQAWLTDSSLVVPLMANPGAAPFISRIEPFSGSYAQTGNKTSSTYFKRIKVKDEVVTKKDYEAARKKWLK
EKEESNAKAQKDLESHVE

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1139522 DQM67_RS07605 WP_005591878.1 1512161..1514137(-) (amiA3) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGAAAAAAAGCAAAGTATTAGCTTTAGCTGGGGTTAGCCTTCTTTCAGTAGGTGTTTTAGCTGCTTGTTCTGGTTCATC
AAAAGGAAACAGCGCAGCAAAAGCTTACAATTATGTCTATACTGCTGAACCAGAAACATTGGACTATGTGACATCTGGTA
AGGCTTCAACAGCTGACCTCGTGACTAACGGTGTGGACGGTTTGTTGGAAAATGACCAATATGGTAATTTTGTACCGTCT
ATTGCAGAGTCTTGGACTGTTTCTAAAGATGGTTTGACTTATACCTATAAAATCCGTAAAGACGCTAAATGGTACACTTC
AGAAGGTGAAGAATATGGTGATGTGACAGCTCAGGACTTTGTGACTGGCCTCAAGCATGCTGCCGACAAGAAATCTGAAG
CCCTTTACCTTGTTCAACATTCTGTAAAAGGCTTGGATGACTACGTAAATGGTAAAACAACTGATTTCTCTACTGTTGGT
GTCAAAGCAGTTGACGACCACACGCTCCAATATACTTTGAACCAACCTGAACCACAGTGGAATTCAAAAACAACTTCACA
AGTTCTTTGGCCAGTTAATGCTGAATTCCTTAAGAAACAAGGGGACAAATTTGGTCAATCTACTGACCCATCTTCTATCC
TTTACAATGGACCATTCTTGATGAAGTCTATCACTGCTAAGTCTGCTGTTGAGTATCAAAAGAATGAAAACTACTGGGAT
AAGGAAAATGTTCATGTTGACACAATTAAGTTGTCTTACTTTGATGGACAAGACCAAGATGCCCTTGCTCGTAACTTTAA
AGACGGCGCCTACACAGTAGCTCGTCTCTACCCTACCAGCTCAAACTATGCTGGAGTAGAAAAAGACTTCAAGGATAATA
TCTTTTTCACACCGCCAAGTGCTGGTGTAGCTGTTATGGGTGTCAATATTGATCGTCAAAGTTACAACCATACAAGCAAA
ACAACAGATGCTCAGAAGTCTGCTACTAAGAAAGCGATTCTGAACAAAGACTTCCGTCAAGCCTTGAACTTTGCTATCGA
CCGTACATCATACTCAGCACAGATCAATGGTAAAGAGGGTGCTCCTTACGCTGTCCGTAATACTTATGTACCACCAACTT
TTGTTCAAGCCGGTGATAAATCTTTTGGTGACGTTGTAGAAGAGAAAGTTGCTGCATTGGGTGACGAATGGAAAGGTGTT
AAACTTGAGGACGGTCAAGATGGCCTCTTTAATGCTGAGAAAGCAAAAGCAGAGTTTGCCAAAGCAAAAGCGGCTCTACA
AGCTGACGGAGTAGAATTCCCAATTCATCTGGATCTCCCAGTTGCTCAGACTGCTAAGCCAATGGTTAACCGCGCGCAAT
CGCTTAAGCAATCTGTTGAAAAGACTTTGGGAACTGAGAATGTTGTTGTAGATATTCAACAAATGTCAGAAGATGATCTT
TACAACATTACTTACTATGCACCAAATGCTGCTGGCGAAGACTGGGATATCTCAACAGCTGTTGGTTGGAACCCTGACTA
TCAAGATCCATCAACTTATTTGGATATTTTGAAAACTACATCAACTGAAACTACAAAGACTTACCTTGGTTTTGAGGGAG
CAGACAATGCTGCCGCTAAGCAAGTTGGTCTAGATGAATATGACCGCTTGGTAGATGAAGCTGGTAAAGAAACTTCAGAT
GTTGTTACTCGTTACGAAAAATATGCAGCAGCTCAGGCTTGGTTGACAGATAGCTCTCTTGTTGTCCCATTGATGGCAAA
CCCTGGTGCAGCACCATTTATCTCACGTATCGAGCCATTCTCAGGTTCTTATGCTCAAACTGGTAATAAGACATCTTCTA
CTTACTTCAAACGTATTAAAGTGAAAGATGAAGTAGTAACGAAGAAAGACTACGAAGCAGCTCGTAAGAAATGGCTGAAA
GAAAAAGAAGAGTCAAATGCGAAAGCACAAAAAGATCTCGAAAGTCATGTAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

66.768

100

0.669
  amiA3 Streptococcus thermophilus LMG 18311

66.313

100

0.664
  amiA Streptococcus salivarius strain HSISS4

65.653

100

0.657

Multiple sequence alignment